Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G320200.1 | Wheat | extracellular | 98.68 | 98.68 |
| TraesCS6B01G370600.1 | Wheat | extracellular | 96.49 | 96.49 |
| HORVU0Hr1G017230.3 | Barley | extracellular | 89.47 | 89.08 |
| HORVU6Hr1G081930.1 | Barley | cytosol | 29.39 | 88.16 |
| TraesCS2A01G264000.1 | Wheat | extracellular | 83.77 | 83.04 |
| EES15044 | Sorghum | extracellular | 78.51 | 79.56 |
| Zm00001d032186_P001 | Maize | extracellular | 78.95 | 78.6 |
| Os08t0434100-01 | Rice | extracellular | 75.0 | 74.67 |
| HORVU6Hr1G081950.3 | Barley | extracellular | 64.91 | 72.91 |
| GSMUA_Achr5P23330_001 | Banana | extracellular | 60.09 | 60.35 |
| KRG89631 | Soybean | endoplasmic reticulum, extracellular | 59.65 | 59.91 |
| KRH70736 | Soybean | extracellular | 58.77 | 59.03 |
| CDY62181 | Canola | extracellular | 58.33 | 58.08 |
| Bra026570.1-P | Field mustard | extracellular | 58.33 | 58.08 |
| CDY09344 | Canola | extracellular | 58.33 | 57.33 |
| GSMUA_Achr7P21030_001 | Banana | extracellular | 55.7 | 57.21 |
| AT2G02990.1 | Thale cress | extracellular | 57.02 | 56.52 |
| KRH74869 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 58.33 | 55.88 |
| CDY45186 | Canola | extracellular | 55.26 | 55.02 |
| Bra024795.1-P | Field mustard | extracellular | 55.26 | 55.02 |
| CDY03023 | Canola | extracellular | 55.26 | 55.02 |
| GSMUA_Achr4P00460_001 | Banana | endoplasmic reticulum, extracellular, plastid | 53.95 | 46.59 |
| TraesCS2A01G157400.1 | Wheat | extracellular | 46.05 | 43.57 |
| TraesCS2A01G157300.1 | Wheat | extracellular | 44.3 | 39.15 |
| TraesCS1A01G152800.1 | Wheat | extracellular | 34.21 | 31.84 |
| TraesCS3A01G398300.1 | Wheat | endoplasmic reticulum, extracellular | 32.89 | 28.74 |
| TraesCS1A01G152600.1 | Wheat | unclear | 29.82 | 26.98 |
| TraesCS3A01G398200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 32.02 | 25.8 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0016787 | GO:GO:0033897 | InterPro:IPR036430 | PFAM:PF00445 |
| ScanProsite:PS00530 | ScanProsite:PS00531 | PFscan:PS51257 | PANTHER:PTHR11240 | PANTHER:PTHR11240:SF35 | InterPro:RNase_T2-like |
| InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic | SUPFAM:SSF55895 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:TraesCS6A01G339600 | EnsemblPlants:TraesCS6A01G339600.1 | TIGR:cd01061 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:+:573019402..573020895
Molecular Weight (calculated)
24923.0 Da
IEP (calculated)
4.663
GRAVY (calculated)
-0.239
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRSCLSLAL LVALSAAGCA AAQAADYDFF YLVLQWPGSY CDTKQSCCYP RSGKPAADFG IHGLWPNRDD GSYPQNCNPA NAFDPSKVSD LLSSLRTEWP
101: TLACPTSDGL QFWAHEWEKH GTCAQNLFNE HGYFQTALHL RDQLRVLDAL TAAGVSPDGG YYTLSAIKGA IQQGTGFEPF VECNRDESGN SQLYQLYFCV
201: DANASGFVEC PVQPGGRPCG NRVEFPTF
101: TLACPTSDGL QFWAHEWEKH GTCAQNLFNE HGYFQTALHL RDQLRVLDAL TAAGVSPDGG YYTLSAIKGA IQQGTGFEPF VECNRDESGN SQLYQLYFCV
201: DANASGFVEC PVQPGGRPCG NRVEFPTF
001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
Arabidopsis Description
RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.