Factsheet for Zm00001d032186_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 16602704
extracellular: 20408568
extracellular: 22501030

msms PMID: 22501030 doi

C Liao, R Liu, F Zhang, C Li, X Li

Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d045617_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	Zm00001d045617_P001	AT1G01010.1	21798944
AT2G02990.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT2G02990.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT2G02990.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT2G02990.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT2G02990.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15044	Sorghum	extracellular	92.58	94.22
TraesCS6D01G320200.1	Wheat	extracellular	78.6	78.95
TraesCS6A01G339600.1	Wheat	extracellular	78.6	78.95
TraesCS6B01G370600.1	Wheat	extracellular	78.17	78.51
HORVU6Hr1G081930.1	Barley	cytosol	25.76	77.63
Os08t0434100-01	Rice	extracellular	77.29	77.29
TraesCS2D01G260000.1	Wheat	extracellular	74.67	74.35
TraesCS2B01G278200.1	Wheat	extracellular	74.24	73.91
HORVU0Hr1G017230.3	Barley	extracellular	73.8	73.8
TraesCS2A01G264000.1	Wheat	extracellular	73.8	73.48
HORVU2Hr1G062880.3	Barley	plastid	75.98	66.16
GSMUA_Achr5P23330_001	Banana	extracellular	59.83	60.35
HORVU6Hr1G081950.3	Barley	extracellular	52.4	59.11
GSMUA_Achr7P21030_001	Banana	extracellular	56.77	58.56
KRH70736	Soybean	extracellular	57.64	58.15
KRG89631	Soybean	endoplasmic reticulum, extracellular	55.9	56.39
AT2G02990.1	Thale cress	extracellular	56.33	56.09
CDY62181	Canola	extracellular	55.9	55.9
Bra026570.1-P	Field mustard	extracellular	55.9	55.9
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	58.08	55.88
CDY09344	Canola	extracellular	56.33	55.6
Bra024795.1-P	Field mustard	extracellular	55.02	55.02
CDY45186	Canola	extracellular	55.02	55.02
CDY03023	Canola	extracellular	55.02	55.02
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	53.28	46.21
Zm00001d022228_P001	Maize	extracellular	43.67	38.61
Zm00001d022630_P001	Maize	plastid	31.44	28.57
Zm00001d042511_P005	Maize	golgi, mitochondrion, plasma membrane	27.07	17.56
Zm00001d042512_P006	Maize	endoplasmic reticulum, extracellular, vacuole	19.65	12.61

Protein Annotations

EntrezGene:100192110	Gene3D:3.90.730.10	MapMan:35.1	UniProt:B4FBD6	EMBL:BT034424	EMBL:EU965778
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004540
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005886
GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009611	GO:GO:0009718	GO:GO:0009987	GO:GO:0009991	GO:GO:0016020
GO:GO:0016036	GO:GO:0016787	GO:GO:0030312	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430
ProteinID:ONM04544.1	PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35
InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00017B68C0	EnsemblPlantsGene:Zm00001d032186	EnsemblPlants:Zm00001d032186_P001	EnsemblPlants:Zm00001d032186_T001
SEG:seg	:	:	:	:	:

Description

Ribonuclease 1

Coordinates

chr1:+:216168360..216169854

Molecular Weight (calculated)

25033.4 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.213

Length

229 amino acids

Sequence
(BLAST)

001: MAAARRLSLP LVLLVVLAVA GRAAAQDYDF FYLVLQWPGA YCDTKQSCCY PKSGKPAADF GIHGLWPNRD DGTYPQNCSP DNAFNPSKVS DLLSSLRAKW
101: PTLACPSNDG LRFWGHEWEK HGTCAADVFD EHGYFQAALR LRDQLGVLGA LTSAGVKPDG GYYTLSQIKG AIRQGTGFEP YVECNRDEAG NSQLYQLYFC
201: VDAAGDSFVD CPVLPSGRPC GNRIEFPAF

Best Arabidopsis Sequence Match ( AT1G26820.1 )
(BLAST)

001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF

Arabidopsis Description

RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.