Factsheet for Os08t0434100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 18372294
extracellular: 19038476
extracellular: 19226311
extracellular: 21255809
extracellular: 24083427
extracellular: 25047395
extracellular: 28232208

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 21255809 doi

T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki

National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

msms PMID: 19226311 doi

WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0643000-01
Os04t0534400-01
Os06t0101800-01
Os08t0156700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	Os06t0101800-01	AT1G01010.1	21798944
AT2G02990.1	Os02t0643000-01	AT3G60600.1	21798944
AT2G02990.1	Os04t0534400-01	AT3G60600.1	21798944
AT2G02990.1	Os08t0156700-01	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15044	Sorghum	extracellular	76.42	77.78
HORVU6Hr1G081930.1	Barley	cytosol	25.76	77.63
Zm00001d032186_P001	Maize	extracellular	77.29	77.29
TraesCS6D01G320200.1	Wheat	extracellular	74.67	75.0
TraesCS6B01G370600.1	Wheat	extracellular	74.67	75.0
TraesCS6A01G339600.1	Wheat	extracellular	74.67	75.0
TraesCS2B01G278200.1	Wheat	extracellular	74.67	74.35
TraesCS2D01G260000.1	Wheat	extracellular	74.24	73.91
TraesCS2A01G264000.1	Wheat	extracellular	74.24	73.91
HORVU0Hr1G017230.3	Barley	extracellular	69.43	69.43
HORVU2Hr1G062880.3	Barley	plastid	75.55	65.78
GSMUA_Achr7P21030_001	Banana	extracellular	56.77	58.56
KRH70736	Soybean	extracellular	56.77	57.27
GSMUA_Achr5P23330_001	Banana	extracellular	55.9	56.39
HORVU6Hr1G081950.3	Barley	extracellular	49.34	55.66
KRG89631	Soybean	endoplasmic reticulum, extracellular	55.02	55.51
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.77	54.62
AT2G02990.1	Thale cress	extracellular	54.59	54.35
Bra026570.1-P	Field mustard	extracellular	52.84	52.84
CDY62181	Canola	extracellular	52.84	52.84
CDY03023	Canola	extracellular	52.4	52.4
CDY09344	Canola	extracellular	52.84	52.16
Bra024795.1-P	Field mustard	extracellular	51.97	51.97
CDY45186	Canola	extracellular	51.97	51.97
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	52.84	45.83
Os07t0630400-01	Rice	extracellular	44.1	39.45
Os07t0629300-00	Rice	cytosol	22.71	38.81
Os07t0629900-00	Rice	cytosol, extracellular	31.0	33.81
Os09t0537700-02	Rice	extracellular	31.44	28.57
Os09t0538000-04	Rice	extracellular	31.0	27.41
Os01t0897300-01	Rice	extracellular	31.88	26.26
Os01t0897200-01	Rice	extracellular, vacuole	26.64	21.48

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	EntrezGene:4345656	EMBL:AB052843	EMBL:AK059802	ProteinID:BAD09840.1
ProteinID:BAD10616.1	ProteinID:BAF23791.1	ProteinID:BAT05580.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004540	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009611	GO:GO:0009718
GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0016036	GO:GO:0016787	GO:GO:0030312
GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	EnsemblPlantsGene:Os08g0434100	EnsemblPlants:Os08t0434100-01	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	UniProt:Q9FEG7	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00000A7DB3	RefSeq:XP_015650871.1	SEG:seg	:	:

Description

RIBONUCLEASE 3Similar to S-like ribonuclease (RNase PD2) (Fragment). (Os08t0434100-01)

Coordinates

chr8:+:21050708..21052845

Molecular Weight (calculated)

24801.0 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.257

Length

229 amino acids

Sequence
(BLAST)

001: MAAAARATAR VGLALLLAVV GVGAQDYDFF FLVLQWPGSY CDTKQSCCYP RSGKPAADFG IHGLWPNRDD GSYPQNCDPD SEFDPSKVSD LLGSMRSEWP
101: TLACPSNDGI RFWAHEWEKH GTCAAAALGD EHGYFEAALR LRSRLPVLAA LRDGGVSPDG GYYTLSQIKG AIQRGVGAEP FVECNRDESG NSQLYQLYFC
201: VDAAGERFVD CPASPGGRPC GNRIEFPAF

Best Arabidopsis Sequence Match ( AT1G26820.1 )
(BLAST)

001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF

Arabidopsis Description

RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.