Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
23159799
extracellular: 28232208 |
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G093560.1 | Barley | extracellular | 76.19 | 78.37 |
| TraesCS1D01G149800.1 | Wheat | extracellular | 75.79 | 77.96 |
| HORVU1Hr1G093780.1 | Barley | vacuole | 75.4 | 77.55 |
| TraesCS1B01G170200.1 | Wheat | extracellular | 75.4 | 77.55 |
| HORVU1Hr1G093670.1 | Barley | cytosol | 67.86 | 77.38 |
| TraesCS1A01G152800.1 | Wheat | extracellular | 74.6 | 76.73 |
| HORVU1Hr1G093660.11 | Barley | extracellular | 74.6 | 75.2 |
| EER99262 | Sorghum | extracellular | 67.46 | 68.27 |
| GSMUA_Achr4P08950_001 | Banana | extracellular | 43.65 | 45.64 |
| Os09t0538000-04 | Rice | extracellular | 40.08 | 39.0 |
| Os08t0434100-01 | Rice | extracellular | 28.57 | 31.44 |
| Os07t0630400-01 | Rice | extracellular | 26.19 | 25.78 |
| Os07t0629300-00 | Rice | cytosol | 11.9 | 22.39 |
| Os07t0629900-00 | Rice | cytosol, extracellular | 18.65 | 22.38 |
| Os01t0897300-01 | Rice | extracellular | 23.81 | 21.58 |
| Os01t0897200-01 | Rice | extracellular, vacuole | 17.46 | 15.49 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | EntrezGene:4347708 | EMBL:AK061438 | EMBL:AK098949 | EMBL:AK104221 |
| EMBL:AK104454 | EMBL:AK104509 | EMBL:AK104553 | EMBL:AK104599 | EMBL:AK104656 | EMBL:AK104888 |
| EMBL:AK119186 | ProteinID:BAD34235.1 | ProteinID:BAD34372.1 | ProteinID:BAF25707.1 | ProteinID:BAT09168.1 | ProteinID:EAZ45496.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0033897 |
| GO:GO:0090502 | InterPro:IPR036430 | EnsemblPlantsGene:Os09g0537700 | EnsemblPlants:Os09t0537700-02 | PFAM:PF00445 | PANTHER:PTHR11240 |
| PANTHER:PTHR11240:SF24 | UniProt:Q69JX7 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:Ribonuclease_T2_eukaryotic | SUPFAM:SSF55895 |
| SignalP:SignalP-noTM | UniParc:UPI00000A6DE6 | RefSeq:XP_015651317.1 | : | : | : |
Description
RIBONUCLEASE 4S-like ribonuclease, Salinity tolerance, Abiotic stress response, Regulation of photomorphogenesis (Os09t0537700-02)
Coordinates
chr9:-:21155963..21157945
Molecular Weight (calculated)
28399.8 Da
IEP (calculated)
5.070
GRAVY (calculated)
-0.159
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQRKFLLCL ILGLLATSGP AKTVNADSPF DFYYLILMWP GAYCTDSEYG CCVPKYGYPS EDFFVKSFMT FDSSENTAVV RCNSDNPFDI NKLDSIENNL
101: NHYWSNIKCP RTDGVNSWKS EWNSYGVCSG LKELDYFKAG LQLRKNADVL SALAEQGIKP DYQLYNTAFI KWAVNQKLGV TPGVQCRDGP FGKKQLYEIY
201: LCVDKDAKSF IDCPVLPNLS CPAEVLFHPF HTWMLNTTSA ANIVMPTETV LA
101: NHYWSNIKCP RTDGVNSWKS EWNSYGVCSG LKELDYFKAG LQLRKNADVL SALAEQGIKP DYQLYNTAFI KWAVNQKLGV TPGVQCRDGP FGKKQLYEIY
201: LCVDKDAKSF IDCPVLPNLS CPAEVLFHPF HTWMLNTTSA ANIVMPTETV LA
001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
Arabidopsis Description
RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.