Factsheet for GSMUA_Achr4P08950_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G152800.1	Wheat	extracellular	44.81	44.08
HORVU1Hr1G093780.1	Barley	vacuole	44.81	44.08
TraesCS1D01G149800.1	Wheat	extracellular	44.4	43.67
HORVU1Hr1G093560.1	Barley	extracellular	44.4	43.67
Os09t0537700-02	Rice	extracellular	45.64	43.65
TraesCS1B01G170200.1	Wheat	extracellular	43.98	43.27
HORVU1Hr1G093620.1	Barley	extracellular	44.81	42.86
TraesCS1A01G152600.1	Wheat	unclear	44.4	42.46
HORVU1Hr1G093660.11	Barley	extracellular	43.98	42.4
TraesCS1D01G149700.1	Wheat	endoplasmic reticulum, extracellular	43.57	41.67
HORVU1Hr1G093670.1	Barley	cytosol	38.17	41.63
TraesCS1B01G170100.1	Wheat	endoplasmic reticulum, extracellular	43.98	41.41
EER99262	Sorghum	extracellular	41.49	40.16
Zm00001d022630_P001	Maize	plastid	41.08	39.29
Os09t0538000-04	Rice	extracellular	41.49	38.61
HORVU1Hr1G093570.1	Barley	vacuole	44.81	38.57
GSMUA_Achr7P21030_001	Banana	extracellular	34.44	37.39
GSMUA_Achr5P23330_001	Banana	extracellular	34.02	36.12
EER99263	Sorghum	extracellular	38.17	35.66
GSMUA_Achr9P02260_001	Banana	extracellular, plasma membrane	36.93	35.6
GSMUA_Achr9P07920_001	Banana	plasma membrane	35.27	32.32
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	35.27	32.2
GSMUA_Achr9P07950_001	Banana	extracellular	38.17	31.51
GSMUA_Achr9P07930_001	Banana	extracellular, plastid, vacuole	37.76	30.64
GSMUA_Achr9P07940_001	Banana	mitochondrion	38.59	28.35
GSMUA_Achr7P23750_001	Banana	mitochondrion	24.9	20.0

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr4G08950_001	EnsemblPlants:GSMUA_Achr4P08950_001	EnsemblPlants:GSMUA_Achr4T08950_001
InterPro:IPR036430	UniProt:M0SMB2	PFAM:PF00445	PANTHER:PTHR11240	PANTHER:PTHR11240:SF24	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000294EA7B

Description

Putative Intracellular ribonuclease LX [Source:GMGC_GENE;Acc:GSMUA_Achr4G08950_001]

Coordinates

chr4:-:6521434..6522920

Molecular Weight (calculated)

26928.5 Da

IEP (calculated)

5.832

GRAVY (calculated)

0.014

Length

241 amino acids

Sequence
(BLAST)

001: MATRVPLAFL CFMLFASPLI AAKTFDFYYL VLMWPGAYCV QSACCRPTTG LPKNDFFVRG LWPFDSTTGK PVTKCNSDPF DIDQLSSLND DLNSYWANLK
101: CPSNNGVVYW KKSWKTYGVC SPMNETEYFQ AALDLRAKVD VLSLLDKKGI KPSLLYIHGA SDIEKAIAEG IGATPVIRCS KGLLGLFQLY EIYICVAKDG
201: KTIIECPEKP RFTCSEEILF TPFDTNKLHN VPPAELPVSD E

Best Arabidopsis Sequence Match ( AT1G14220.1 )
(BLAST)

001: MGAKGCVNVL LKLLVFQGLF VSRPQEDFDF FYFVLQWPGA YCDTSRACCY PTSGKPAADF GIHGLWPNYN GGSWPSNCDP DSQFDRSQIS DLVSSLKKNW
101: PTLSCPSNEG FNFWEHEWEK HGTCSESVMD QHEYFENALK LKQKANLLQI LKNSGINPDD GFYNLDKITN AIKDGIGFTP GIECNKDPER NAQLHQIYIC
201: VDTSGTEFIE CPVLPRGSCP SQIQFSKF

Arabidopsis Description

F7A19.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI64]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.