Factsheet for TraesCS1A01G152600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G170100.1	Wheat	endoplasmic reticulum, extracellular	97.22	95.7
TraesCS1D01G149700.1	Wheat	endoplasmic reticulum, extracellular	95.63	95.63
HORVU1Hr1G093620.1	Barley	extracellular	92.06	92.06
HORVU1Hr1G093570.1	Barley	vacuole	92.06	82.86
Os09t0538000-04	Rice	extracellular	63.1	61.39
Zm00001d022630_P001	Maize	plastid	59.13	59.13
EER99263	Sorghum	extracellular	56.75	55.43
GSMUA_Achr4P08950_001	Banana	extracellular	42.46	44.4
TraesCS1A01G152800.1	Wheat	extracellular	40.87	42.04
TraesCS2A01G264000.1	Wheat	extracellular	28.17	30.87
TraesCS6A01G339600.1	Wheat	extracellular	26.98	29.82
TraesCS2A01G157400.1	Wheat	extracellular	24.6	25.73
TraesCS2A01G157300.1	Wheat	extracellular	24.6	24.03
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	20.63	18.37
TraesCS3A01G398300.1	Wheat	endoplasmic reticulum, extracellular	18.65	18.01

Protein Annotations

EnsemblPlants:TraesCS1A01G152600.1	EnsemblPlantsGene:TraesCS1A01G152600	Gene3D:3.90.730.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430
InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:Ribonuclease_T2_eukaryotic	PANTHER:PTHR11240	PANTHER:PTHR11240:SF23	PFAM:PF00445
SignalP:SignalP-noTM	SUPFAM:SSF55895	TIGR:cd01061	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:262944430..262947823

Molecular Weight (calculated)

27275.0 Da

IEP (calculated)

8.598

GRAVY (calculated)

0.115

Length

252 amino acids

Sequence
(BLAST)

001: MALRTALLCL LGMLIASPAI AVSDSGIYYQ IGLMWPGAYC AQTTRGCCMP RSPVVPATDF YVSGFTVFNA TTDAPETSCS GTPFNSGEIL EISGLRQFWS
101: NIKCPSNNGQ SSWKSAWKTS GVCSGLDDKA YFQAAIALRS KINPLSRLVS KGIKPDFGLY SLEKIKKVIQ AGTGVTPVIQ CSKGPFDKFQ LYQIFICVAG
201: DAKTLIECPK PQKFTCSDEI LFHPFKKWML KQAASSVSYA EAFEVAGAAM GY

Best Arabidopsis Sequence Match ( AT1G14220.1 )
(BLAST)

001: MGAKGCVNVL LKLLVFQGLF VSRPQEDFDF FYFVLQWPGA YCDTSRACCY PTSGKPAADF GIHGLWPNYN GGSWPSNCDP DSQFDRSQIS DLVSSLKKNW
101: PTLSCPSNEG FNFWEHEWEK HGTCSESVMD QHEYFENALK LKQKANLLQI LKNSGINPDD GFYNLDKITN AIKDGIGFTP GIECNKDPER NAQLHQIYIC
201: VDTSGTEFIE CPVLPRGSCP SQIQFSKF

Arabidopsis Description

F7A19.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI64]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.