Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 66.8 | 75.88 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 66.41 | 75.44 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 65.25 | 74.12 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 65.25 | 74.12 |
| Zm00001d017390_P001 | Maize | cytosol | 63.32 | 72.89 |
| KXG31128 | Sorghum | cytosol | 62.55 | 72.0 |
| Zm00001d051288_P001 | Maize | cytosol | 61.39 | 70.67 |
| Os04t0534400-01 | Rice | cytosol | 57.92 | 60.0 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 54.44 | 59.0 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 54.05 | 58.58 |
| Solyc01g090910.2.1 | Tomato | nucleus | 50.58 | 56.22 |
| Solyc10g018350.1.1 | Tomato | cytosol | 51.35 | 55.88 |
| Os02t0661900-02 | Rice | cytosol | 22.78 | 55.66 |
| Os08t0156700-01 | Rice | plasma membrane | 50.97 | 54.32 |
| KRH65384 | Soybean | cytosol | 50.19 | 53.94 |
| KRH76164 | Soybean | endoplasmic reticulum | 49.81 | 53.53 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 49.03 | 53.14 |
| AT2G23830.1 | Thale cress | cytosol | 30.5 | 53.02 |
| Bra003313.1-P | Field mustard | cytosol | 44.4 | 51.57 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 47.49 | 51.46 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 47.49 | 51.25 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 47.49 | 51.25 |
| AT2G45140.1 | Thale cress | cytosol | 47.1 | 51.05 |
| CDY48365 | Canola | cytosol | 47.1 | 51.05 |
| GSMUA_Achr11P... | Banana | cytosol | 39.38 | 51.0 |
| CDY41153 | Canola | cytosol | 46.72 | 50.84 |
| CDX71796 | Canola | cytosol | 46.72 | 50.84 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 46.72 | 50.63 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 46.72 | 50.63 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 47.1 | 50.62 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 46.33 | 50.21 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 46.33 | 50.21 |
| Bra007547.1-P | Field mustard | cytosol | 45.95 | 50.0 |
| CDY56247 | Canola | cytosol | 45.95 | 49.58 |
| CDY57247 | Canola | cytosol | 45.95 | 49.58 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 45.95 | 49.38 |
| Os08t0155100-01 | Rice | plasma membrane | 45.17 | 49.37 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 42.47 | 48.46 |
| AT3G60600.1 | Thale cress | cytosol | 47.1 | 47.66 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 51.35 | 47.5 |
| PGSC0003DMT400066920 | Potato | cytosol | 47.88 | 46.44 |
| Solyc06g034220.2.1 | Tomato | nucleus | 40.54 | 46.26 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.42 | 45.0 |
| Zm00001d036342_P001 | Maize | cytosol | 42.86 | 44.4 |
| Os10t0507600-01 | Rice | cytosol, plasma membrane | 40.93 | 44.17 |
| Bra035442.1-P | Field mustard | cytosol | 17.76 | 42.59 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 15.06 | 38.24 |
| Os10t0549100-01 | Rice | plasma membrane | 33.98 | 37.77 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 34.75 | 36.89 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 18.15 | 34.31 |
| Os02t0652550-00 | Rice | cytosol | 34.75 | 33.71 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 37.07 | 25.26 |
| Os05t0373000-01 | Rice | cytosol | 36.29 | 19.71 |
| AT1G51270.3 | Thale cress | cytosol | 39.0 | 15.86 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:4330129 | EMBL:AK073818 | ProteinID:BAD25238.1 | ProteinID:BAF09472.1 |
| ProteinID:BAS80001.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | EnsemblPlantsGene:Os02g0643000 | EnsemblPlants:Os02t0643000-01 | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF87 | InterPro:PapD-like_sf | UniProt:Q6H7R1 | SUPFAM:SSF49354 |
| TMHMM:TMhelix | UniParc:UPI00003B43D6 | InterPro:VAP | RefSeq:XP_015622735.1 | SEG:seg | : |
Description
Similar to VAP27. (Os02t0643000-01)
Coordinates
chr2:-:25828426..25831324
Molecular Weight (calculated)
28513.3 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.312
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEAKKDSIF GGLASGAPVG ADRFPFDPRE YSPAMSSDSR ELLGIDPPEL IFPFELKKQI SCSLHLTNKT DEYVTFKVKT TSPKKYCVRP NNGIVAPQST
101: SNVLVTMQAQ REAPPDMQCK DKFLVQSAIV TQELTPKDIT GDMFTKESGN VVDEVKLKVV YTQPHPTSLN GGSEEGLGSL SYQEATKGSR ESETVTSEPL
201: ALISKLKEEK SSAIQQNMKL REELDLLRRQ MGSQHGGFSL VFVLVIAILG ILLGFLIKR
101: SNVLVTMQAQ REAPPDMQCK DKFLVQSAIV TQELTPKDIT GDMFTKESGN VVDEVKLKVV YTQPHPTSLN GGSEEGLGSL SYQEATKGSR ESETVTSEPL
201: ALISKLKEEK SSAIQQNMKL REELDLLRRQ MGSQHGGFSL VFVLVIAILG ILLGFLIKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.