Factsheet for Os04t0233400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
extracellular: 26072143
plasma membrane: 27800704

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0509600-01
Os02t0643000-01
Os02t0666200-01
Os04t0233400-01
Os04t0534400-01
Os04t0559700-01
Os07t0448800-01
Os08t0156700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	Os02t0666200-01	AT1G01620.1	21798944
AT2G16850.1	Os04t0559700-01	AT1G01620.1	21798944
AT2G16850.1	Os07t0448800-01	AT2G37180.1	21798944
AT2G16850.1	Os02t0643000-01	AT3G60600.1	21798944
AT2G16850.1	Os04t0534400-01	AT3G60600.1	21798944
AT2G16850.1	Os08t0156700-01	AT3G60600.1	21798944
AT2G16850.1	Os02t0666200-01	AT4G00430.1	21798944
AT2G16850.1	Os04t0559700-01	AT4G00430.1	21798944
AT2G16850.1	Os02t0666200-01	AT4G23400.1	21798944
AT2G16850.1	Os04t0559700-01	AT4G23400.1	21798944
AT4G35100.1	Os02t0666200-01	AT1G01620.1	21798944
AT4G35100.1	Os04t0559700-01	AT1G01620.1	21798944
AT4G35100.1	Os02t0509600-01	AT1G27300.1	21798944
AT4G35100.1	Os04t0233400-01	AT2G16850.1	21798944
AT4G35100.1	Os02t0643000-01	AT3G60600.1	21798944
AT4G35100.1	Os04t0534400-01	AT3G60600.1	21798944
AT4G35100.1	Os08t0156700-01	AT3G60600.1	21798944
AT4G35100.1	Os02t0666200-01	AT3G61430.1	21798944
AT4G35100.1	Os04t0559700-01	AT3G61430.1	21798944
AT4G35100.1	Os02t0666200-01	AT4G00430.1	21798944
AT4G35100.1	Os04t0559700-01	AT4G00430.1	21798944
AT4G35100.1	Os02t0666200-01	AT4G23400.1	21798944
AT4G35100.1	Os04t0559700-01	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G063900.1	Wheat	plasma membrane	88.65	88.03
TraesCS2B01G077700.1	Wheat	plasma membrane	88.65	88.03
TraesCS2A01G065700.1	Wheat	golgi	88.65	88.03
VIT_03s0038g02520.t01	Wine grape	plasma membrane	84.04	84.95
AT2G16850.1	Thale cress	plasma membrane	82.98	84.17
KRH60692	Soybean	mitochondrion	81.21	83.27
CDX69112	Canola	plasma membrane	82.27	82.56
Bra011585.1-P	Field mustard	plasma membrane	81.91	82.21
CDY52648	Canola	plasma membrane	81.91	82.21
AT4G35100.1	Thale cress	plasma membrane	81.56	82.14
KRH51390	Soybean	plasma membrane	80.5	81.65
Bra017697.1-P	Field mustard	cytosol	81.21	81.49
CDX76314	Canola	cytosol	81.21	81.49
CDY17511	Canola	plasma membrane	80.85	81.14
PGSC0003DMT400015824	Potato	plasma membrane	81.21	80.92
Solyc01g111660.2.1	Tomato	nucleus	81.21	80.92
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.5	80.78
CDX72515	Canola	golgi, plasma membrane	71.63	79.53
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	70.21	78.88
Solyc10g055630.1.1	Tomato	nucleus, plastid	79.08	78.8
PGSC0003DMT400068708	Potato	plasma membrane	78.37	78.09
Solyc02g083510.2.1	Tomato	nucleus	71.28	77.61
Os07t0448800-01	Rice	plasma membrane	79.43	77.24
KRH16406	Soybean	extracellular	41.49	76.47
Os02t0629200-02	Rice	plasma membrane	77.66	76.04
Os07t0448400-01	Rice	plasma membrane	35.82	74.81
GSMUA_Achr1P26380_001	Banana	plasma membrane	74.47	74.73
Os04t0521100-01	Rice	plasma membrane	76.24	74.14
Os07t0448100-01	Rice	plasma membrane	75.18	74.13
HORVU2Hr1G010990.2	Barley	plasma membrane	79.43	70.44
Os09t0541000-01	Rice	cytosol, plasma membrane, vacuole	68.79	66.9
Os04t0559700-01	Rice	plasma membrane	68.09	66.67
Os02t0666200-01	Rice	plasma membrane	68.09	66.44
Os03t0861300-01	Rice	cytosol, peroxisome, plasma membrane	62.77	63.21
Os07t0448200-00	Rice	mitochondrion, nucleus, plastid	59.93	61.01
Os10t0481100-01	Rice	plasma membrane	18.09	54.84
Os06t0336200-01	Rice	nucleus	31.56	35.89
Os02t0658100-01	Rice	vacuole	25.18	34.47
Os03t0146100-01	Rice	nucleus	28.72	32.4
Os04t0550900-00	Rice	endoplasmic reticulum, extracellular, vacuole	16.31	32.39
Os10t0492600-01	Rice	plastid	29.79	31.82
Os01t0232000-00	Rice	cytosol, endoplasmic reticulum, plasma membrane	27.3	30.68
Os04t0527900-01	Rice	plastid	28.01	29.81
Os04t0550800-01	Rice	endoplasmic reticulum, plasma membrane	27.3	28.62
Os01t0232100-01	Rice	cytosol, endoplasmic reticulum, extracellular	24.82	27.34
Os05t0231700-01	Rice	golgi, mitochondrion, plasma membrane	26.24	23.57

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EntrezGene:4335226	EMBL:AK061312	EMBL:AK061491	EMBL:AK102155
InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ProteinID:BAF14206.1	ProteinID:BAS88230.1	ProteinID:BAS88231.1	ProteinID:CAE05002.2
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS
EnsemblPlantsGene:Os04g0233400	EnsemblPlants:Os04t0233400-01	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF196	UniProt:Q7XLR1	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00001B1C5D
RefSeq:XP_015636702.1	SEG:seg	:	:	:	:

Description

PLASMA MEMBRANE INTRINSIC PROTEIN 2;6Similar to Arabidopsis thaliana (Fragment). (Os04t0233400-01);Similar to cDNA clone:006-302-B10, full insert sequence. (Os04t0233400-02)

Coordinates

chr4:-:8948360..8949943

Molecular Weight (calculated)

29964.6 Da

IEP (calculated)

9.226

GRAVY (calculated)

0.483

Length

282 amino acids

Sequence
(BLAST)

001: MSKEVSEEPE HVRPKDYTDP PPAPLFDVGE LRLWSFYRAL IAEFIATLLF LYITVATVIG YKVQSSADQC GGVGTLGIAW AFGGMIFILV YCTAGISGGH
101: INPAVTFGLL LARKVSVIRA VMYIVAQCLG GIVGVGIVKG IMKHQYNANG GGANMVASGY STGTALGAEI IGTFVLVYTV FSATDPKRNA RDSHVPVLAP
201: LPIGFAVFMV HLATIPITGT GINPARSIGA AVIYNQKKAW DDHWIFWAGP FIGALAAAAY HQYILRAAAI KALGSFRSNP SN

Best Arabidopsis Sequence Match ( AT2G16850.1 )
(BLAST)

001: MSKEVSEEGR HGKDYVDPPP APLLDMAELK LWSFYRAIIA EFIATLLFLY VTVATVIGHK NQTGPCGGVG LLGIAWAFGG MIFVLVYCTA GISGGHINPA
101: VTFGLFLARK VSLPRAVAYM VAQCLGAICG VGLVKAFMMT PYKRLGGGAN TVADGYSTGT ALGAEIIGTF VLVYTVFSAT DPKRSARDSH VPVLAPLPIG
201: FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNEKAWDDHW IFWVGPFVGA LAAAAYHQYI LRAAAIKALA SFRSNPTN

Arabidopsis Description

PIP2-8Probable aquaporin PIP2-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.