CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71738
CDX71796
CDX84933
CDX89063
CDX89115
CDX94185
CDY03907
CDY07681
CDY10936
CDY14415
CDY15722
CDY27605
CDY41153
CDY48365
CDY48920
CDY66912
CDY66913

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35100.1	CDX84933	AT1G27300.1	21798944
AT4G35100.1	CDY03907	AT1G27300.1	21798944
AT4G35100.1	CDY15722	AT1G27300.1	21798944
AT4G35100.1	CDY27605	AT1G27300.1	21798944
AT4G35100.1	CDY07681	AT2G39010.1	21798944
AT4G35100.1	CDY14415	AT2G39010.1	21798944
AT4G35100.1	CDX67837	AT3G60600.1	21798944
AT4G35100.1	CDX71796	AT3G60600.1	21798944
AT4G35100.1	CDX89063	AT3G60600.1	21798944
AT4G35100.1	CDY41153	AT3G60600.1	21798944
AT4G35100.1	CDY48365	AT3G60600.1	21798944
AT4G35100.1	CDX71738	AT3G61430.1	21798944
AT4G35100.1	CDX89115	AT3G61430.1	21798944
AT4G35100.1	CDY48920	AT3G61430.1	21798944
AT4G35100.1	CDY66912	AT3G61430.1	21798944
AT4G35100.1	CDY66913	AT3G61430.1	21798944
AT4G35100.1	CDX94185	AT4G23400.1	21798944
AT4G35100.1	CDY10936	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76314	Canola	cytosol	99.29	99.29
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	98.93	98.93
CDY52648	Canola	plasma membrane	97.86	97.86
CDX69112	Canola	plasma membrane	97.51	97.51
AT4G35100.1	Thale cress	plasma membrane	95.37	95.71
CDX72515	Canola	golgi, plasma membrane	83.63	92.52
KRH60692	Soybean	mitochondrion	87.54	89.45
VIT_03s0038g02520.t01	Wine grape	plasma membrane	87.54	88.17
Solyc01g111660.2.1	Tomato	nucleus	88.26	87.63
GSMUA_Achr5P11480_001	Banana	plasma membrane	61.57	87.37
PGSC0003DMT400015824	Potato	plasma membrane	87.9	87.28
KRH51390	Soybean	plasma membrane	85.77	86.69
GSMUA_Achr2P11190_001	Banana	plasma membrane	83.63	83.63
GSMUA_Achr1P02360_001	Banana	unclear	82.92	82.62
Os04t0233400-01	Rice	plasma membrane	81.14	80.85
KRH16406	Soybean	extracellular	43.42	79.74
TraesCS2D01G063900.1	Wheat	plasma membrane	80.43	79.58
TraesCS2B01G077700.1	Wheat	plasma membrane	80.43	79.58
TraesCS2A01G065700.1	Wheat	golgi	80.43	79.58
CDY70391	Canola	extracellular, golgi	44.84	79.25
CDY31523	Canola	plasma membrane	72.24	78.08
CDY53629	Canola	cytosol	71.53	77.61
CDY09192	Canola	plasma membrane	71.17	77.22
CDX88767	Canola	plasma membrane	71.17	76.92
CDX71032	Canola	plasma membrane	71.17	76.92
CDY46758	Canola	plasma membrane	75.44	74.91
CDY66912	Canola	extracellular	54.8	74.76
CDX91340	Canola	plasma membrane	75.8	74.74
CDY56697	Canola	plasma membrane	76.16	74.56
CDX78177	Canola	plasma membrane	76.16	74.56
GSMUA_Achr1P07460_001	Banana	extracellular	46.26	74.29
CDY07519	Canola	plasma membrane	75.44	74.13
CDX67611	Canola	plasma membrane	75.44	74.13
CDY46759	Canola	plasma membrane	75.09	74.04
CDX73446	Canola	peroxisome	74.73	73.43
CDX78265	Canola	plasma membrane	74.73	73.43
CDX91341	Canola	plasma membrane	74.38	73.33
CDY07681	Canola	plasma membrane	74.73	72.92
CDY14415	Canola	cytosol, peroxisome, plasma membrane	74.73	72.92
CDY13298	Canola	plasma membrane	74.38	72.82
CDX89115	Canola	plasma membrane	57.3	71.56
GSMUA_Achr1P26380_001	Banana	plasma membrane	71.53	71.53
CDX74983	Canola	cytosol, peroxisome, plasma membrane	49.82	71.07
CDY51161	Canola	cytosol, peroxisome, plasma membrane	71.53	70.28
CDY07221	Canola	cytosol, peroxisome, plasma membrane	71.17	69.93
CDX74334	Canola	cytosol, peroxisome, plasma membrane	71.53	69.79
CDY38017	Canola	plasma membrane	70.82	69.58
CDX91911	Canola	cytosol, peroxisome, plasma membrane	71.17	69.44
CDX90046	Canola	cytosol, peroxisome, plasma membrane	70.46	69.23
CDX74984	Canola	cytosol, peroxisome, plasma membrane	75.8	68.71
CDY10936	Canola	plasma membrane	70.11	68.64
CDX94185	Canola	plasma membrane	69.75	68.29
CDX95670	Canola	cytosol, peroxisome, plasma membrane	69.04	67.83
CDY27346	Canola	cytosol, peroxisome, plasma membrane	68.68	67.48
CDX74777	Canola	cytosol, peroxisome, plasma membrane	68.68	67.48
CDX83385	Canola	cytosol, peroxisome, plasma membrane	68.68	67.48
CDY37078	Canola	cytosol, peroxisome, plasma membrane	68.68	67.48
CDX71738	Canola	plasma membrane	68.33	67.13
CDY48920	Canola	plasma membrane	68.33	67.13
CDY18886	Canola	cytosol, peroxisome, plasma membrane	68.33	67.13
HORVU2Hr1G010990.2	Barley	plasma membrane	70.46	62.26
CDY15165	Canola	plastid	70.46	61.11
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.81	38.15
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.81	38.15
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.45	37.9
CDX97733	Canola	endoplasmic reticulum, extracellular	33.45	37.9
CDX82410	Canola	plasma membrane	33.45	37.75
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.74	36.8
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.74	36.8
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.1	36.76
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	27.4	36.67
CDY51678	Canola	plasma membrane, vacuole	32.38	36.4
CDY48983	Canola	plasma membrane	32.74	36.36
CDY28539	Canola	plasma membrane	32.74	36.36
CDY07142	Canola	cytosol	32.38	36.11
CDY69446	Canola	cytosol	32.38	36.11
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.03	35.86
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.03	35.86
CDY66645	Canola	plastid	28.11	35.75
CDY67380	Canola	plastid	28.11	35.75
CDY13639	Canola	plasma membrane	31.67	35.18
CDX83623	Canola	golgi, plasma membrane, plastid	31.67	35.18
CDX77009	Canola	cytosol, plasma membrane, vacuole	30.61	34.54
CDY35336	Canola	extracellular	17.44	34.27
CDY53270	Canola	plasma membrane	30.61	34.26
CDY66321	Canola	plasma membrane	32.38	34.21
CDX75873	Canola	extracellular, golgi, vacuole	33.1	33.82
CDY11123	Canola	cytosol	31.67	33.58
CDX68239	Canola	cytosol	31.67	33.58
CDY48045	Canola	golgi, mitochondrion, plasma membrane	31.67	33.46
CDX96453	Canola	cytosol	30.96	32.83
CDX72962	Canola	plasma membrane	30.61	32.45
CDY26214	Canola	plasma membrane	30.61	32.21
CDY19176	Canola	plasma membrane	30.61	32.21
CDY21731	Canola	golgi, mitochondrion, plasma membrane	30.25	31.84
CDX81850	Canola	golgi, mitochondrion, plasma membrane	30.25	31.84
CDY66913	Canola	cytosol, mitochondrion, nucleus	4.98	30.43
CDY47413	Canola	mitochondrion, plastid	25.98	28.29
CDX99048	Canola	mitochondrion, plastid	25.98	28.29

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	GO:A0A078FX10	UniProt:A0A078FX10	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY17511	ProteinID:CDY17511	ProteinID:CDY17511.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00095707001	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix
UniParc:UPI0001B37DFC	:	:	:	:	:

Description

BnaC03g65520DBnaC03g65520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX10]

Coordinates

chrLK032074:+:460601..462374

Molecular Weight (calculated)

29771.3 Da

IEP (calculated)

9.061

GRAVY (calculated)

0.480

Length

281 amino acids

Sequence
(BLAST)

001: MSKEVSEEGH TQSHGKDYVD PPPAPFLDMG ELKSWSFYRA LIAEFIATLL FLYVTVATVI GHKKQTGPCD GVGLLGIAWA FGGMIFVLVY CTAGVSGGHI
101: NPAVTFGLFL ARKVSLVRAV GYMIAQCLGA ICGVGFVKAF MKTPYNTLGG GANTVAPGYS KGTALGAEII GTFVLVYTVF SATDPKRSAR DSHIPVLAPL
201: PIGFAVFMVH LATIPITGTG INPARSFGAA VIYNNEKAWD DHWIFWVGPF VGALAAAAYH QYILRAAAVK ALASFRSSAT N

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.