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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67611
CDX69112
CDX71738
CDX72515
CDX73446
CDX76314
CDX78265
CDX89115
CDX94185
CDX97739
CDY07519
CDY10936
CDY17511
CDY30157
CDY48920
CDY52648
CDY66912
CDY66913

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37180.1 CDX97739 AT3G16310.1 21798944
AT2G37180.1 CDY30157 AT3G16310.1 21798944
AT2G37180.1 CDX67611 AT3G54820.1 21798944
AT2G37180.1 CDX73446 AT3G54820.1 21798944
AT2G37180.1 CDX78265 AT3G54820.1 21798944
AT2G37180.1 CDY07519 AT3G54820.1 21798944
AT2G37180.1 CDX71738 AT3G61430.1 21798944
AT2G37180.1 CDX89115 AT3G61430.1 21798944
AT2G37180.1 CDY48920 AT3G61430.1 21798944
AT2G37180.1 CDY66912 AT3G61430.1 21798944
AT2G37180.1 CDY66913 AT3G61430.1 21798944
AT2G37180.1 CDX94185 AT4G23400.1 21798944
AT2G37180.1 CDY10936 AT4G23400.1 21798944
AT2G37180.1 CDX69112 AT4G35100.1 21798944
AT2G37180.1 CDX72515 AT4G35100.1 21798944
AT2G37180.1 CDX76314 AT4G35100.1 21798944
AT2G37180.1 CDY17511 AT4G35100.1 21798944
AT2G37180.1 CDY52648 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70391 Canola extracellular, golgi 55.44 99.37
Bra023103.1-P Field mustard plasma membrane 98.25 98.25
CDX91340 Canola plasma membrane 95.79 95.79
CDY46758 Canola plasma membrane 94.39 95.05
CDX91341 Canola plasma membrane 94.74 94.74
CDX74983 Canola cytosol, peroxisome, plasma membrane 64.21 92.89
AT2G37180.1 Thale cress plasma membrane 92.28 92.28
CDY56697 Canola plasma membrane 92.28 91.64
CDX78177 Canola plasma membrane 91.93 91.29
CDY13298 Canola plasma membrane 90.53 89.9
CDX74984 Canola cytosol, peroxisome, plasma membrane 95.79 88.06
CDX71032 Canola plasma membrane 75.44 82.69
CDY09192 Canola plasma membrane 75.09 82.63
CDX88767 Canola plasma membrane 75.09 82.31
PGSC0003DMT400027154 Potato plasma membrane 80.7 81.85
EER98451 Sorghum plasma membrane 82.81 81.38
CDY31523 Canola plasma membrane 74.04 81.15
Solyc10g084120.1.1 Tomato nucleus 80.0 81.14
AT2G37170.2 Thale cress plasma membrane 93.33 81.1
Zm00001d019563_P006 Maize plasma membrane 82.46 81.03
TraesCS2A01G198500.1 Wheat plasma membrane 82.46 81.03
CDY53629 Canola cytosol 73.33 80.69
TraesCS2D01G206300.1 Wheat golgi 82.11 80.69
TraesCS2B01G225900.1 Wheat golgi 82.11 80.69
Os07t0448800-01 Rice plasma membrane 81.4 80.0
Zm00001d005421_P001 Maize plasma membrane 81.4 79.45
CDX67611 Canola plasma membrane 78.95 78.67
CDY07519 Canola plasma membrane 78.95 78.67
CDX78265 Canola plasma membrane 77.54 77.27
CDX73446 Canola peroxisome 77.19 76.92
CDY66912 Canola extracellular 55.44 76.7
CDX72515 Canola golgi, plasma membrane 68.07 76.38
CDX69112 Canola plasma membrane 74.74 75.8
CDY52648 Canola plasma membrane 74.74 75.8
CDX76314 Canola cytosol 74.39 75.44
CDY17511 Canola plasma membrane 74.04 75.09
CDY07681 Canola plasma membrane 75.44 74.65
CDX89115 Canola plasma membrane 58.25 73.78
CDY14415 Canola cytosol, peroxisome, plasma membrane 74.39 73.61
HORVU2Hr1G038740.1 Barley golgi, mitochondrion, plasma membrane 82.46 68.92
CDX71738 Canola plasma membrane 68.07 67.83
CDY48920 Canola plasma membrane 68.07 67.83
CDY10936 Canola plasma membrane 68.07 67.6
CDX90046 Canola cytosol, peroxisome, plasma membrane 67.72 67.48
CDY51161 Canola cytosol, peroxisome, plasma membrane 67.72 67.48
CDX74777 Canola cytosol, peroxisome, plasma membrane 67.37 67.13
CDY38017 Canola plasma membrane 67.37 67.13
CDY18886 Canola cytosol, peroxisome, plasma membrane 67.37 67.13
CDX83385 Canola cytosol, peroxisome, plasma membrane 67.37 67.13
CDY07221 Canola cytosol, peroxisome, plasma membrane 67.37 67.13
CDX74334 Canola cytosol, peroxisome, plasma membrane 67.72 67.01
CDX94185 Canola plasma membrane 67.37 66.9
CDY27346 Canola cytosol, peroxisome, plasma membrane 67.02 66.78
CDX95670 Canola cytosol, peroxisome, plasma membrane 67.02 66.78
CDY37078 Canola cytosol, peroxisome, plasma membrane 67.02 66.78
CDX91911 Canola cytosol, peroxisome, plasma membrane 67.37 66.67
CDY15165 Canola plastid 67.72 59.57
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 33.68 38.71
CDX97733 Canola endoplasmic reticulum, extracellular 33.68 38.71
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 33.33 38.15
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 33.33 38.15
CDX82410 Canola plasma membrane 32.98 37.75
CDY07142 Canola cytosol 32.98 37.3
CDY69446 Canola cytosol 32.98 37.3
CDY48983 Canola plasma membrane 32.28 36.36
CDY28539 Canola plasma membrane 32.28 36.36
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 26.67 36.19
CDY67380 Canola plastid 27.72 35.75
CDY66645 Canola plastid 27.72 35.75
CDX83623 Canola golgi, plasma membrane, plastid 31.23 35.18
CDY13639 Canola plasma membrane 31.23 35.18
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 31.23 35.18
CDY53270 Canola plasma membrane 30.88 35.06
CDY35336 Canola extracellular 17.54 34.97
CDX77009 Canola cytosol, plasma membrane, vacuole 30.53 34.94
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 30.53 34.8
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 30.53 34.8
CDY51678 Canola plasma membrane, vacuole 30.53 34.8
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 30.53 34.66
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 30.53 34.66
CDY66321 Canola plasma membrane 32.28 34.59
CDX75873 Canola extracellular, golgi, vacuole 33.33 34.55
CDY48045 Canola golgi, mitochondrion, plasma membrane 31.58 33.83
CDX96453 Canola cytosol 30.88 33.21
CDX72962 Canola plasma membrane 30.53 32.83
CDX68239 Canola cytosol 30.53 32.83
CDY11123 Canola cytosol 30.53 32.83
CDY26214 Canola plasma membrane 30.18 32.21
CDY19176 Canola plasma membrane 30.18 32.21
CDY21731 Canola golgi, mitochondrion, plasma membrane 29.47 31.46
CDX81850 Canola golgi, mitochondrion, plasma membrane 29.12 31.09
CDX99048 Canola mitochondrion, plastid 25.61 28.29
CDY47413 Canola mitochondrion, plastid 25.61 28.29
CDY66913 Canola cytosol, mitochondrion, nucleus 4.21 26.09
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078IBM6UniProt:A0A078IBM6InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY46759ProteinID:CDY46759ProteinID:CDY46759.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00086084001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF260SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0004EE7757SEG:seg::::
Description
BnaA03g17030DBnaA03g17030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBM6]
Coordinates
chrLK032684:+:105430..106887
Molecular Weight (calculated)
30230.6 Da
IEP (calculated)
7.493
GRAVY (calculated)
0.553
Length
285 amino acids
Sequence
(BLAST)
001: MAKDAEGAEG FATRDYQDPP PAPFFDAEEL TRWSLYRAVI AEFVATLLFL YVTVLTVMGY KISSDTAAGG VECGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVTL VRALLYMVAQ CLGAICGVGF VKAFQSAYYV RYGGGANSLA DGYSTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNES KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)
001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.