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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 26746009
msms PMID: 26746009 doi
S Chen, Y Luo, G Ding, F Xu
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002462.1-P Field mustard cytosol 98.85 98.85
CDY53629 Canola cytosol 98.08 98.46
CDX71032 Canola plasma membrane 96.15 96.15
CDX88767 Canola plasma membrane 95.77 95.77
CDY09192 Canola plasma membrane 94.23 94.59
CDY70391 Canola extracellular, golgi 52.69 86.16
AT5G60660.1 Thale cress plasma membrane 90.38 80.76
CDY66912 Canola extracellular 60.0 75.73
CDY46758 Canola plasma membrane 81.92 75.27
CDX91341 Canola plasma membrane 81.54 74.39
CDX91340 Canola plasma membrane 81.54 74.39
CDY56697 Canola plasma membrane 81.92 74.22
CDY46759 Canola plasma membrane 81.15 74.04
CDX78177 Canola plasma membrane 81.54 73.87
CDY13298 Canola plasma membrane 81.15 73.52
CDY17511 Canola plasma membrane 78.08 72.24
CDY52648 Canola plasma membrane 78.08 72.24
CDX76314 Canola cytosol 77.69 71.89
CDX69112 Canola plasma membrane 77.69 71.89
CDX72515 Canola golgi, plasma membrane 69.62 71.26
CDX89115 Canola plasma membrane 60.77 70.22
CDX74983 Canola cytosol, peroxisome, plasma membrane 53.08 70.05
CDY07519 Canola plasma membrane 75.77 68.88
CDX67611 Canola plasma membrane 75.77 68.88
CDX74984 Canola cytosol, peroxisome, plasma membrane 81.54 68.39
CDX78265 Canola plasma membrane 74.62 67.83
CDX73446 Canola peroxisome 74.23 67.48
CDY07681 Canola plasma membrane 74.23 67.01
CDY14415 Canola cytosol, peroxisome, plasma membrane 73.46 66.32
TraesCS5A01G332300.1 Wheat plasma membrane 70.77 63.23
TraesCS5B01G332500.1 Wheat plasma membrane 70.0 62.54
TraesCS5D01G338200.1 Wheat plasma membrane 70.0 62.54
Os09t0541000-01 Rice cytosol, plasma membrane, vacuole 68.85 61.72
Zm00001d022608_P001 Maize plasma membrane 68.08 61.46
CDY10936 Canola plasma membrane 67.69 61.32
CDX94185 Canola plasma membrane 67.69 61.32
CDY38017 Canola plasma membrane 66.92 60.84
CDX90046 Canola cytosol, peroxisome, plasma membrane 66.92 60.84
CDX95670 Canola cytosol, peroxisome, plasma membrane 66.54 60.49
CDY51161 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDX83385 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDX74777 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDY37078 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDY27346 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDY18886 Canola cytosol, peroxisome, plasma membrane 66.15 60.14
CDX71738 Canola plasma membrane 65.77 59.79
CDY48920 Canola plasma membrane 65.77 59.79
CDY07221 Canola cytosol, peroxisome, plasma membrane 65.77 59.79
CDX74334 Canola cytosol, peroxisome, plasma membrane 66.15 59.72
CDX91911 Canola cytosol, peroxisome, plasma membrane 65.77 59.38
HORVU5Hr1G084230.1 Barley extracellular, golgi, mitochondrion 70.38 58.84
CDY15165 Canola plastid 66.92 53.7
TraesCS7B01G096000.1 Wheat golgi, peroxisome, plasma membrane 62.31 53.29
TraesCS7A01G191200.1 Wheat golgi, peroxisome, plasma membrane 61.92 52.96
TraesCS4A01G286200.1 Wheat golgi, peroxisome, plasma membrane 61.92 52.96
TraesCS7D01G192200.1 Wheat golgi, peroxisome, plasma membrane 61.54 52.63
TraesCS4B01G027600.1 Wheat plasma membrane 54.23 48.45
KXG36091 Sorghum cytosol, peroxisome, plasma membrane 52.69 42.02
HORVU7Hr1G038940.1 Barley golgi 31.92 40.69
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 30.0 37.14
CDY07142 Canola cytosol 34.23 35.32
CDY69446 Canola cytosol 34.23 35.32
CDY67380 Canola plastid 30.0 35.29
CDY66645 Canola plastid 30.0 35.29
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 33.46 35.08
CDX97733 Canola endoplasmic reticulum, extracellular 33.46 35.08
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 33.46 34.94
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 33.46 34.94
CDX82410 Canola plasma membrane 33.08 34.54
CDY35336 Canola extracellular 18.46 33.57
CDY48983 Canola plasma membrane 32.31 33.2
CDY13639 Canola plasma membrane 32.31 33.2
CDY28539 Canola plasma membrane 32.31 33.2
CDX83623 Canola golgi, plasma membrane, plastid 32.31 33.2
CDY66321 Canola plasma membrane 33.85 33.08
CDY51678 Canola plasma membrane, vacuole 31.54 32.8
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 31.54 32.67
CDY53270 Canola plasma membrane 31.54 32.67
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 31.54 32.67
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 31.54 32.41
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 31.15 32.4
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 31.15 32.4
CDY48045 Canola golgi, mitochondrion, plasma membrane 33.08 32.33
CDX77009 Canola cytosol, plasma membrane, vacuole 30.0 31.33
CDY11123 Canola cytosol 31.92 31.32
CDX68239 Canola cytosol 31.92 31.32
CDY26214 Canola plasma membrane 31.92 31.09
CDX96453 Canola cytosol 31.54 30.94
CDX75873 Canola extracellular, golgi, vacuole 32.69 30.91
CDY19176 Canola plasma membrane 31.54 30.71
CDX72962 Canola plasma membrane 31.15 30.57
CDY21731 Canola golgi, mitochondrion, plasma membrane 30.38 29.59
CDX81850 Canola golgi, mitochondrion, plasma membrane 30.38 29.59
CDY47413 Canola mitochondrion, plastid 26.92 27.13
CDX99048 Canola mitochondrion, plastid 26.54 26.74
CDY66913 Canola cytosol, mitochondrion, nucleus 3.85 21.74
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078H3Y8UniProt:A0A078H3Y8InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY31523ProteinID:CDY31523ProteinID:CDY31523.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00047835001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF260SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0004EE2794SEG:seg::::
Description
BnaA10g13480DBnaA10g13480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Y8]
Coordinates
chrLK032274:+:89463..90841
Molecular Weight (calculated)
27330.0 Da
IEP (calculated)
7.401
GRAVY (calculated)
0.412
Length
260 amino acids
Sequence
(BLAST)
001: MAKDLEVQDG GATAARDYVD PPPAPLLDME EFGKWSLYRA TDSNAGGVDC GGVGILGIAW AFGGMIFVLV YCTAGVSGGH INPAVTFGLF LARKVSLVRT
101: VLYIVAQCLG AICGCGLVKA FQSSYYTRYG GGANELADGY NKGTGLGAEI IGTFVLVYTV FSATDPKRSA RDSHIPVLAP LPIGFAVFMV HLATIPITGT
201: GINPARSFGA AVIYNQEKAW DDQWIFWVGP MIGAAAAALY HQFVLRAAGI KSLGSFRSSA
Best Arabidopsis Sequence Match ( AT2G37170.1 )
(BLAST)
001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.