Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006650.1-P | Field mustard | plasma membrane | 90.72 | 92.63 |
| CDX71032 | Canola | plasma membrane | 82.47 | 92.31 |
| CDX88767 | Canola | plasma membrane | 81.79 | 91.54 |
| Bra020238.1-P | Field mustard | plasma membrane | 88.32 | 90.81 |
| Bra002462.1-P | Field mustard | cytosol | 81.1 | 90.77 |
| CDY31523 | Canola | plasma membrane | 80.76 | 90.38 |
| CDY53629 | Canola | cytosol | 80.41 | 90.35 |
| CDY09192 | Canola | plasma membrane | 80.41 | 90.35 |
| AT2G37180.1 | Thale cress | plasma membrane | 80.76 | 82.46 |
| AT3G53420.1 | Thale cress | plasma membrane | 80.41 | 81.53 |
| AT2G16850.1 | Thale cress | plasma membrane | 76.29 | 79.86 |
| AT4G35100.1 | Thale cress | plasma membrane | 76.29 | 79.29 |
| AT3G54820.1 | Thale cress | plasma membrane | 74.57 | 75.87 |
| AT2G39010.1 | Thale cress | plasma membrane | 74.91 | 75.43 |
| AT2G37170.2 | Thale cress | plasma membrane | 81.44 | 72.26 |
| TraesCS5A01G332300.1 | Wheat | plasma membrane | 68.04 | 68.04 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 66.67 | 67.83 |
| TraesCS5B01G332500.1 | Wheat | plasma membrane | 67.35 | 67.35 |
| TraesCS5D01G338200.1 | Wheat | plasma membrane | 67.35 | 67.35 |
| AT4G23400.1 | Thale cress | plasma membrane | 66.32 | 67.25 |
| Os09t0541000-01 | Rice | cytosol, plasma membrane, vacuole | 66.67 | 66.9 |
| Zm00001d022608_P001 | Maize | plasma membrane | 65.98 | 66.67 |
| AT3G61430.1 | Thale cress | plasma membrane | 65.29 | 66.43 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 65.29 | 66.2 |
| HORVU5Hr1G084230.1 | Barley | extracellular, golgi, mitochondrion | 67.7 | 63.34 |
| AT2G45960.3 | Thale cress | golgi, peroxisome, plasma membrane | 60.82 | 58.8 |
| TraesCS7B01G096000.1 | Wheat | golgi, peroxisome, plasma membrane | 59.45 | 56.91 |
| TraesCS7A01G191200.1 | Wheat | golgi, peroxisome, plasma membrane | 59.11 | 56.58 |
| TraesCS7D01G192200.1 | Wheat | golgi, peroxisome, plasma membrane | 58.76 | 56.25 |
| TraesCS4A01G286200.1 | Wheat | golgi, peroxisome, plasma membrane | 58.08 | 55.59 |
| TraesCS4B01G027600.1 | Wheat | plasma membrane | 53.26 | 53.26 |
| KXG36091 | Sorghum | cytosol, peroxisome, plasma membrane | 52.23 | 46.63 |
| HORVU7Hr1G038940.1 | Barley | golgi | 32.65 | 46.57 |
| AT3G16240.1 | Thale cress | plasma membrane | 32.3 | 37.6 |
| AT5G47450.1 | Thale cress | golgi, plasma membrane | 31.27 | 36.4 |
| AT4G17340.1 | Thale cress | golgi, plasma membrane, vacuole | 30.93 | 36.0 |
| AT4G01470.1 | Thale cress | cytosol, golgi, plasma membrane | 30.93 | 35.71 |
| AT3G26520.1 | Thale cress | plasma membrane | 30.93 | 35.57 |
| AT2G36830.1 | Thale cress | golgi, plasma membrane, vacuole | 29.55 | 34.26 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 28.87 | 33.73 |
| AT1G73190.1 | Thale cress | plasma membrane | 29.9 | 32.46 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 28.87 | 31.46 |
| AT3G47440.1 | Thale cress | mitochondrion, plastid | 23.71 | 26.95 |
| AT1G52180.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 11.0 | 25.81 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | EntrezGene:836187 | UniProt:A0A178UG45 | ProteinID:AED97364.1 | EMBL:AK228720 |
| ArrayExpress:AT5G60660 | EnsemblPlantsGene:AT5G60660 | RefSeq:AT5G60660 | TAIR:AT5G60660 | RefSeq:AT5G60660-TAIR-G | EnsemblPlants:AT5G60660.1 |
| TAIR:AT5G60660.1 | EMBL:AY087245 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | ProteinID:BAB09839.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 |
| GO:GO:0006833 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009653 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009987 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016049 | GO:GO:0030154 | GO:GO:0034220 | GO:GO:0040007 | GO:GO:0048767 | GO:GO:0055085 |
| GO:GO:0080170 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | RefSeq:NP_200874.1 | ProteinID:OAO91631.1 |
| PFAM:PF00230 | Symbol:PIP2F | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF260 | UniProt:Q9FF53 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| UniParc:UPI00000A003E | SEG:seg | : | : | : | : |
Description
PIP2-4PIP2F [Source:UniProtKB/TrEMBL;Acc:A0A178UG45]
Coordinates
chr5:-:24375368..24377206
Molecular Weight (calculated)
30953.6 Da
IEP (calculated)
8.183
GRAVY (calculated)
0.490
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDLDVNES GPPAARDYKD PPPAPFFDME ELRKWPLYRA VIAEFVATLL FLYVSILTVI GYKAQTDATA GGVDCGGVGI LGIAWAFGGM IFVLVYCTAG
101: ISGGHINPAV TVGLFLARKV SLVRTVLYIV AQCLGAICGC GFVKAFQSSY YTRYGGGANE LADGYNKGTG LGAEIIGTFV LVYTVFSATD PKRNARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN NEKAWDDQWI FWVGPMIGAA AAAFYHQFIL RAAAIKALGS FGSFGSFRSF A
101: ISGGHINPAV TVGLFLARKV SLVRTVLYIV AQCLGAICGC GFVKAFQSSY YTRYGGGANE LADGYNKGTG LGAEIIGTFV LVYTVFSATD PKRNARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN NEKAWDDQWI FWVGPMIGAA AAAFYHQFIL RAAAIKALGS FGSFGSFRSF A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.