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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, golgi, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX81850 Canola golgi, mitochondrion, plasma membrane 92.88 92.88
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 92.88 92.88
CDY21731 Canola golgi, mitochondrion, plasma membrane 92.88 92.88
CDY19176 Canola plasma membrane 92.51 92.51
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 92.13 92.13
CDY26214 Canola plasma membrane 91.76 91.76
AT1G73190.1 Thale cress plasma membrane 85.77 85.45
VIT_16s0039g00220.t01 Wine grape cytosol 72.66 74.9
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 71.16 74.51
KRH38823 Soybean nucleus 70.41 73.73
KRH34280 Soybean endoplasmic reticulum 68.16 71.65
Solyc06g072130.2.1 Tomato extracellular 69.29 71.43
PGSC0003DMT400069330 Potato cytosol 68.54 70.66
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 68.54 70.38
KRG92517 Soybean cytosol 66.67 70.08
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 68.16 70.0
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 65.92 69.29
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 65.54 68.9
TraesCS1D01G175200.1 Wheat unclear 61.05 61.98
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 61.05 61.98
HORVU1Hr1G043890.2 Barley mitochondrion 61.05 61.98
Zm00001d013956_P003 Maize plasma membrane 60.67 61.83
Os10t0492600-01 Rice plastid 61.05 61.74
TraesCS1B01G182200.1 Wheat golgi 60.67 61.6
EER94020 Sorghum golgi, mitochondrion, plasma membrane 60.67 60.9
Zm00001d032610_P003 Maize mitochondrion, plastid 60.3 60.53
AT4G01470.1 Thale cress cytosol, golgi, plasma membrane 55.43 58.73
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 54.68 58.17
AT3G26520.1 Thale cress plasma membrane 53.56 56.52
AT4G17340.1 Thale cress golgi, plasma membrane, vacuole 51.69 55.2
AT3G16240.1 Thale cress plasma membrane 51.69 55.2
Os04t0527900-01 Rice plastid 54.68 55.09
TraesCS2A01G374400.1 Wheat plasma membrane 53.56 53.96
TraesCS2D01G370800.1 Wheat plasma membrane 53.56 53.96
Zm00001d002952_P001 Maize plasma membrane 53.56 53.96
EES11105 Sorghum mitochondrion, plasma membrane 53.93 53.73
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 53.18 53.58
AT5G47450.1 Thale cress golgi, plasma membrane 49.06 52.4
AT2G25810.1 Thale cress cytosol, golgi, plasma membrane 47.19 50.6
AT1G52180.1 Thale cress endoplasmic reticulum, extracellular, vacuole 22.1 47.58
EER95659 Sorghum mitochondrion 44.94 44.28
AT3G47440.1 Thale cress mitochondrion, plastid 37.45 39.06
Zm00001d048520_P014 Maize mitochondrion 34.46 34.33
AT3G61430.1 Thale cress plasma membrane 33.33 31.12
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 33.33 31.12
AT4G23400.1 Thale cress plasma membrane 33.33 31.01
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 33.33 31.01
AT2G16850.1 Thale cress plasma membrane 32.21 30.94
AT3G53420.1 Thale cress plasma membrane 32.58 30.31
AT2G37180.1 Thale cress plasma membrane 32.21 30.18
AT4G35100.1 Thale cress plasma membrane 31.46 30.0
AT3G54820.1 Thale cress plasma membrane 31.46 29.37
AT5G60660.1 Thale cress plasma membrane 31.46 28.87
AT2G39010.1 Thale cress plasma membrane 30.71 28.37
AT2G37170.2 Thale cress plasma membrane 32.58 26.52
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 28.84 25.58
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3EntrezGene:838359UniProt:A0A178WI57ProteinID:AAF97261.1ProteinID:AEE29639.1
EMBL:AF026275EMBL:AK229035ArrayExpress:AT1G17810EnsemblPlantsGene:AT1G17810RefSeq:AT1G17810TAIR:AT1G17810
RefSeq:AT1G17810-TAIR-GEnsemblPlants:AT1G17810.1TAIR:AT1G17810.1InterPro:Aquaporin-likeInterPro:Aquaporin_transptrUnigene:At.48202
Symbol:BETA-TIPGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0005887GO:GO:0006810
GO:GO:0006833GO:GO:0008150GO:GO:0009705GO:GO:0015250GO:GO:0015267GO:GO:0016020
GO:GO:0016021GO:GO:0034220GO:GO:0042807GO:GO:0055085InterPro:IPR023271InterPro:MIP
InterPro:MIP_CSRefSeq:NP_173223.1UniProt:O22588ProteinID:OAP17153.1PFAM:PF00230PO:PO:0007131
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF30SUPFAM:SSF81338TIGRFAMs:TIGR00861
TMHMM:TMhelixUniParc:UPI00000A49BESEG:seg:::
Description
TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
Coordinates
chr1:+:6130025..6131627
Molecular Weight (calculated)
28184.4 Da
IEP (calculated)
7.085
GRAVY (calculated)
0.643
Length
267 amino acids
Sequence
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.