Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os04t0527900-01 | |
| Os05t0520100-00 | |
| Os10t0492600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73190.1 | Os04t0527900-01 | AT1G73190.1 | 23163742 |
| AT1G73190.1 | Os10t0492600-01 | AT1G73190.1 | 23163742 |
| AT1G73190.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT1G73190.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G374400.1 | Wheat | plasma membrane | 82.64 | 82.64 |
| TraesCS2D01G370800.1 | Wheat | plasma membrane | 82.26 | 82.26 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 81.89 | 81.89 |
| EES11105 | Sorghum | mitochondrion, plasma membrane | 76.23 | 75.37 |
| Zm00001d002952_P001 | Maize | plasma membrane | 74.72 | 74.72 |
| GSMUA_Achr4P26010_001 | Banana | cytosol, golgi, plasma membrane | 63.02 | 65.75 |
| GSMUA_Achr2P10640_001 | Banana | cytosol, golgi, plasma membrane | 62.64 | 65.35 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 58.87 | 60.23 |
| Os10t0492600-01 | Rice | plastid | 57.74 | 57.95 |
| KRH38823 | Soybean | nucleus | 53.96 | 56.08 |
| PGSC0003DMT400069330 | Potato | cytosol | 54.72 | 55.98 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 54.72 | 55.77 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 53.58 | 55.69 |
| Solyc06g072130.2.1 | Tomato | extracellular | 54.34 | 55.6 |
| KRH34280 | Soybean | endoplasmic reticulum | 53.21 | 55.51 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 54.34 | 55.38 |
| KRG92517 | Soybean | cytosol | 52.83 | 55.12 |
| CDX72962 | Canola | plasma membrane | 54.72 | 54.72 |
| Bra016014.1-P | Field mustard | cytosol | 54.72 | 54.72 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 55.09 | 54.68 |
| CDX96453 | Canola | cytosol | 54.34 | 54.34 |
| CDY66321 | Canola | plasma membrane | 54.34 | 54.14 |
| AT1G73190.1 | Thale cress | plasma membrane | 54.72 | 54.1 |
| Os03t0146100-01 | Rice | nucleus | 50.57 | 53.6 |
| CDX68239 | Canola | cytosol | 53.58 | 53.58 |
| CDY11123 | Canola | cytosol | 53.58 | 53.58 |
| Bra008079.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 53.58 | 53.38 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 53.58 | 53.38 |
| Bra025947.1-P | Field mustard | cytosol, golgi, plasma membrane | 53.58 | 53.18 |
| Bra031005.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 53.58 | 53.18 |
| CDY19176 | Canola | plasma membrane | 53.58 | 53.18 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 53.58 | 53.18 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 53.21 | 52.81 |
| CDY26214 | Canola | plasma membrane | 53.21 | 52.81 |
| Os02t0658100-01 | Rice | vacuole | 38.49 | 49.51 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 42.64 | 45.02 |
| Os06t0336200-01 | Rice | nucleus | 39.62 | 42.34 |
| Os01t0232100-01 | Rice | cytosol, endoplasmic reticulum, extracellular | 36.23 | 37.5 |
| Os04t0550900-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 19.62 | 36.62 |
| Os04t0550800-01 | Rice | endoplasmic reticulum, plasma membrane | 33.58 | 33.09 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 38.87 | 32.8 |
| Os03t0861300-01 | Rice | cytosol, peroxisome, plasma membrane | 32.45 | 30.71 |
| Os07t0448100-01 | Rice | plasma membrane | 30.57 | 28.32 |
| Os04t0521100-01 | Rice | plasma membrane | 30.94 | 28.28 |
| Os07t0448400-01 | Rice | plasma membrane | 14.34 | 28.15 |
| Os04t0233400-01 | Rice | plasma membrane | 29.81 | 28.01 |
| Os02t0629200-02 | Rice | plasma membrane | 30.19 | 27.78 |
| Os07t0448800-01 | Rice | plasma membrane | 30.19 | 27.59 |
| Os09t0541000-01 | Rice | cytosol, plasma membrane, vacuole | 29.81 | 27.24 |
| Os04t0559700-01 | Rice | plasma membrane | 27.92 | 25.69 |
| Os02t0666200-01 | Rice | plasma membrane | 27.92 | 25.61 |
| Os07t0448200-00 | Rice | mitochondrion, nucleus, plastid | 26.42 | 25.27 |
| Os10t0481100-01 | Rice | plasma membrane | 8.3 | 23.66 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | EntrezGene:4336464 | EMBL:AK108116 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| ProteinID:BAF15285.1 | ProteinID:BAS90178.1 | ProteinID:CAE05657.2 | ProteinID:EAZ31408.1 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0009705 |
| GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0042807 |
| GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | EnsemblPlantsGene:Os04g0527900 | EnsemblPlants:Os04t0527900-01 |
| PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF30 | UniProt:Q7XKI5 |
| SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI000021C919 | RefSeq:XP_015637278.1 | SEG:seg |
Description
TONOPLAST INTRINSIC PROTEIN 3;2Similar to Tonoplast membrane integral protein ZmTIP3-2. (Os04t0527900-01)
Coordinates
chr4:+:26380265..26381537
Molecular Weight (calculated)
27546.7 Da
IEP (calculated)
9.625
GRAVY (calculated)
0.534
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPGRHTPRR ADAAAAAAAM EPLVPGATRA ALSEFVATAV FVFAAEGSVY GLWKMYRDTG TLGGLLVVAV AHALALAAAV AVSRNASGGH VNPAVTFGVL
101: VGRRISFARA ALYWAAQLLG AVLAVLLLRL ASGGMRPMGF TLGHRIHERH ALLLEVVMTF GLVYTVYATA VDRRSGGGDI APLAIGLVAG ANILAGGPFD
201: GAAMNPARAF GPALVGWNWR HHWVYWLGPL IGAGMAGALY EFVMAEQPEP PAAADTRLPV AAEDY
101: VGRRISFARA ALYWAAQLLG AVLAVLLLRL ASGGMRPMGF TLGHRIHERH ALLLEVVMTF GLVYTVYATA VDRRSGGGDI APLAIGLVAG ANILAGGPFD
201: GAAMNPARAF GPALVGWNWR HHWVYWLGPL IGAGMAGALY EFVMAEQPEP PAAADTRLPV AAEDY
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
Arabidopsis Description
TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.