Factsheet for Os04t0550900-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 3
vacuole 4
extracellular 3
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0643000-01
Os04t0534400-01
Os05t0520100-00
Os08t0156700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17340.1	Os01t0200500-01	AT3G16310.1	21798944
AT4G17340.1	Os05t0520100-00	AT3G16310.1	21798944
AT4G17340.1	Os02t0643000-01	AT3G60600.1	21798944
AT4G17340.1	Os04t0534400-01	AT3G60600.1	21798944
AT4G17340.1	Os08t0156700-01	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002738_P001	Maize	plasma membrane	82.39	47.18
EES12617	Sorghum	plasma membrane	82.39	46.99
Zm00001d026177_P001	Maize	extracellular	81.69	46.77
TraesCS2A01G414100.1	Wheat	plasma membrane	80.28	45.97
TraesCS2D01G411400.1	Wheat	plasma membrane	80.28	45.97
TraesCS2B01G433200.1	Wheat	plasma membrane	79.58	45.56
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	75.35	42.97
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	74.65	42.57
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	73.94	42.0
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	73.94	42.0
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	72.54	41.2
AT5G47450.1	Thale cress	golgi, plasma membrane	69.72	39.6
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	69.01	39.2
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	69.01	39.2
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	68.31	38.8
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	68.31	38.65
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	68.31	38.65
CDY51678	Canola	plasma membrane, vacuole	67.61	38.4
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	67.61	38.25
AT4G17340.1	Thale cress	golgi, plasma membrane, vacuole	66.9	38.0
KRH77347	Soybean	mitochondrion	66.2	37.75
Os06t0336200-01	Rice	nucleus	64.08	36.69
KRH28112	Soybean	mitochondrion	64.08	36.55
Os02t0658100-01	Rice	vacuole	52.82	36.41
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	45.77	30.95
Bra022131.1-P	Field mustard	extracellular	44.37	30.88
Os03t0146100-01	Rice	nucleus	53.52	30.4
Os01t0232000-00	Rice	cytosol, endoplasmic reticulum, plasma membrane	46.48	26.29
Os10t0481100-01	Rice	plasma membrane	15.49	23.66
Os10t0492600-01	Rice	plastid	43.66	23.48
Os01t0232100-01	Rice	cytosol, endoplasmic reticulum, extracellular	42.25	23.44
Os04t0550800-01	Rice	endoplasmic reticulum, plasma membrane	42.96	22.68
Os04t0527900-01	Rice	plastid	36.62	19.62
Os05t0231700-01	Rice	golgi, mitochondrion, plasma membrane	39.44	17.83
Os07t0448800-01	Rice	plasma membrane	35.92	17.59
Os07t0448100-01	Rice	plasma membrane	33.8	16.78
Os02t0629200-02	Rice	plasma membrane	33.8	16.67
Os04t0521100-01	Rice	plasma membrane	33.8	16.55
Os04t0233400-01	Rice	plasma membrane	32.39	16.31
Os03t0861300-01	Rice	cytosol, peroxisome, plasma membrane	31.69	16.07
Os04t0559700-01	Rice	plasma membrane	28.17	13.89
Os02t0666200-01	Rice	plasma membrane	28.17	13.84
Os09t0541000-01	Rice	cytosol, plasma membrane, vacuole	26.76	13.1
Os07t0448200-00	Rice	mitochondrion, nucleus, plastid	21.83	11.19
AT1G52180.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	9.15	10.48
VIT_00s2783g00010.t01	Wine grape	extracellular	4.23	4.84
Os07t0448400-01	Rice	plasma membrane	2.82	2.96

Protein Annotations

Gene3D:1.20.1080.10	MapMan:35.1	UniProt:A0A0P0WDK9	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ProteinID:BAS90379.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	EnsemblPlantsGene:Os04g0550900
EnsemblPlants:Os04t0550900-00	PFAM:PF00230	PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF257	SUPFAM:SSF81338
TMHMM:TMhelix	UniParc:UPI00039395E8	:	:	:	:

Description

aquaporin TIP2-3. (Os04t0550900-00)

Coordinates

chr4:-:27595492..27596105

Molecular Weight (calculated)

14517.8 Da

IEP (calculated)

8.893

GRAVY (calculated)

0.820

Length

142 amino acids

Sequence
(BLAST)

001: MVKLAFGSCG DSFSASSIKA YVAEFIATLL FVFAGVGSAI AYGQLTKGGA LDPAGLVAIA IAHAFALFVG VSMAANISGG HLNPVVTFGL AVGGHITILT
101: GIFYWVAQLL GASVACLLCS SPPTDRLSRR TPSPELARSR AW

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.