Factsheet for Solyc06g060760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 3
plasma membrane 4
endoplasmic reticulum 4
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17340.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT4G17340.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G17340.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	98.4	98.4
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	85.2	85.2
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	85.2	85.2
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	84.8	85.14
AT4G17340.1	Thale cress	golgi, plasma membrane, vacuole	84.8	84.8
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	84.4	84.4
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	83.6	83.94
VIT_00s2783g00010.t01	Wine grape	extracellular	41.6	83.87
Os02t0658100-01	Rice	vacuole	68.8	83.5
TraesCS6A01G250300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	82.8	83.13
TraesCS6D01G232100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	82.8	83.13
CDY51678	Canola	plasma membrane, vacuole	82.8	82.8
Zm00001d002738_P001	Maize	plasma membrane	82.0	82.66
Bra022131.1-P	Field mustard	extracellular	67.2	82.35
HORVU0Hr1G032130.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	82.0	82.33
HORVU6Hr1G062980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	82.0	82.33
AT5G47450.1	Thale cress	golgi, plasma membrane	82.0	82.0
EES12617	Sorghum	plasma membrane	81.6	81.93
TraesCS6B01G275100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	81.6	81.93
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.0	81.67
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.0	81.67
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	81.6	81.6
Zm00001d017485_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	81.6	81.6
Zm00001d051362_P001	Maize	plasma membrane	81.2	81.53
KXG31086	Sorghum	golgi, plasma membrane, vacuole	81.2	81.53
Zm00001d026177_P001	Maize	extracellular	80.8	81.45
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	81.6	81.27
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	68.0	80.95
TraesCS2B01G433200.1	Wheat	plasma membrane	80.0	80.65
TraesCS2D01G411400.1	Wheat	plasma membrane	79.6	80.24
TraesCS2A01G414100.1	Wheat	plasma membrane	79.2	79.84
Solyc12g044330.1.1	Tomato	plastid	76.8	77.42
KRH28112	Soybean	mitochondrion	76.4	76.71
KRH77347	Soybean	mitochondrion	76.0	76.31
Os04t0550900-00	Rice	endoplasmic reticulum, extracellular, vacuole	42.0	73.94
Solyc06g066560.1.1	Tomato	mitochondrion	77.6	71.06
Solyc10g083880.1.1	Tomato	plastid	62.8	63.31
Solyc06g074820.2.1	Tomato	plastid	60.0	60.0
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	58.4	57.71
AT1G52180.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	28.0	56.45
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	52.8	53.44
Solyc06g072130.2.1	Tomato	extracellular	53.2	51.35
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	52.4	50.38
Solyc03g093230.2.1	Tomato	plastid	48.8	48.61
Solyc09g007770.2.1	Tomato	nucleus	37.2	35.91
Solyc02g083510.2.1	Tomato	nucleus	36.0	34.75
Solyc10g084120.1.1	Tomato	nucleus	37.6	33.45
Solyc06g011350.2.1	Tomato	nucleus	36.8	32.86
Solyc01g111660.2.1	Tomato	nucleus	36.8	32.51
Solyc10g055630.1.1	Tomato	nucleus, plastid	36.0	31.8
Solyc11g069430.1.1	Tomato	plastid	36.4	31.71
Solyc09g007760.2.1	Tomato	extracellular	37.6	30.72
Solyc01g094690.2.1	Tomato	nucleus	34.4	30.18
Solyc08g081190.2.1	Tomato	plastid	34.4	30.07
Solyc03g096290.2.1	Tomato	nucleus	34.4	30.07
Solyc12g056220.1.1	Tomato	plastid	34.4	29.86
Solyc08g008050.2.1	Tomato	peroxisome	33.6	29.27
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	30.8	26.64

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EMBL:AB845620	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705
GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807
GO:GO:0055085	InterPro:IPR023271	UniProt:K4C6Q6	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc06g060760.2
EnsemblPlants:Solyc06g060760.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B34C0C	:	:

Description

Tonoplast intrinsic protein 23 [Source:UniProtKB/TrEMBL;Acc:K4C6Q6]

Coordinates

chr6:+:38791367..38792690

Molecular Weight (calculated)

25076.7 Da

IEP (calculated)

6.066

GRAVY (calculated)

0.950

Length

250 amino acids

Sequence
(BLAST)

001: MVKIAFGSIG DSLSVGSLKA YLAEFIATLL FVFAGVGSAI AFNKLTSGAA LDPAGLVAIA VAHAFALFVG VSMAANISGG HLNPAVTLGL AVGGNITILT
101: GLFYWVAQLL GSTVACLLLK YVTNGLAVPT HGVAAGMSGA EGVVMEIVIT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVAGD FSQNWIYWVG PLIGGGLAGF IYGDVFIGCH TPLPTSEDYA

Best Arabidopsis Sequence Match ( AT5G47450.1 )
(BLAST)

001: MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV

Arabidopsis Description

TIP2-3Aquaporin TIP2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL2]
SUBAcon: [golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.