Factsheet for Solyc05g055990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plasma membrane

Predictor Summary:

cytosol 1
plastid 1
plasma membrane 5
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060322	Potato	mitochondrion	77.85	81.82
Solyc09g007770.2.1	Tomato	nucleus	56.75	63.32
Solyc11g069430.1.1	Tomato	plastid	60.21	60.63
Solyc02g083510.2.1	Tomato	nucleus	53.98	60.23
Solyc06g011350.2.1	Tomato	nucleus	58.13	60.0
Solyc10g084120.1.1	Tomato	nucleus	58.13	59.79
Solyc03g096290.2.1	Tomato	nucleus	57.79	58.39
Solyc10g055630.1.1	Tomato	nucleus, plastid	57.09	58.3
Solyc08g081190.2.1	Tomato	plastid	57.44	58.04
Solyc01g094690.2.1	Tomato	nucleus	57.09	57.89
Solyc08g008050.2.1	Tomato	peroxisome	57.44	57.84
Solyc12g056220.1.1	Tomato	plastid	57.44	57.64
Solyc01g111660.2.1	Tomato	nucleus	56.4	57.6
Solyc09g007760.2.1	Tomato	extracellular	56.75	53.59
Solyc12g044330.1.1	Tomato	plastid	29.41	34.27
Solyc06g074820.2.1	Tomato	plastid	28.37	32.8
Solyc10g083880.1.1	Tomato	plastid	27.34	31.85
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	26.99	30.83
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	26.64	30.8
Solyc06g066560.1.1	Tomato	mitochondrion	29.07	30.77
Solyc06g072130.2.1	Tomato	extracellular	24.91	27.8
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	23.53	27.53
Solyc03g093230.2.1	Tomato	plastid	23.88	27.49
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	22.84	25.38

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	UniProt:K4C2S4	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF167	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc05g055990.2
EnsemblPlants:Solyc05g055990.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000276744D	:	:

Description

No Description!

Coordinates

chr5:+:65393464..65395596

Molecular Weight (calculated)

31330.1 Da

IEP (calculated)

7.427

GRAVY (calculated)

0.383

Length

289 amino acids

Sequence
(BLAST)

001: MSNEVSSALP ERSSSPAKDY HEPPPAPFIG AAELKKWALY RALIAEFVAT LLLLYIGQLT IMGYKSESDH DPCGSVGLLG VAWVFGGMVF ILVYCTAGIS
101: GGHINPAVTF GLFLSRKISL IRGLLYIVVQ YLGAICGTAL VKAIYKSKFE LYGGGVNSVS PGYTRGVAWS AEMIGTFVLV YTVLSATDSK RNARDSHVPV
201: LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAVIYNQQ IAWEDPWDLF WRTFHRSTYC SNLPTNTEGM QMEISDATYI CSRICVCDL

Best Arabidopsis Sequence Match ( AT2G37170.1 )
(BLAST)

001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [golgi,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.