Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
plastid: 26371478 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 94.76 | 94.76 |
| Solyc12g056220.1.1 | Tomato | plastid | 94.41 | 93.75 |
| Solyc08g008050.2.1 | Tomato | peroxisome | 94.06 | 93.73 |
| GSMUA_AchrUn_... | Banana | extracellular | 59.09 | 88.95 |
| GSMUA_Achr8P11540_001 | Banana | extracellular | 58.04 | 87.37 |
| GSMUA_Achr5P12400_001 | Banana | extracellular | 58.04 | 87.37 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 38.81 | 86.72 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 86.36 | 86.06 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 86.36 | 86.06 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 86.01 | 86.01 |
| Os04t0559700-01 | Rice | plasma membrane | 86.36 | 85.76 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 85.66 | 85.66 |
| CDY38017 | Canola | plasma membrane | 85.66 | 85.66 |
| Bra032644.1-P | Field mustard | plasma membrane | 85.66 | 85.66 |
| Zm00001d017526_P001 | Maize | plasma membrane | 86.36 | 85.47 |
| CDY66912 | Canola | extracellular | 61.54 | 85.44 |
| CDY51161 | Canola | cytosol, peroxisome, plasma membrane | 85.31 | 85.31 |
| GSMUA_AchrUn_... | Banana | extracellular | 56.64 | 85.26 |
| EES07484 | Sorghum | plasma membrane | 86.01 | 85.12 |
| Zm00001d002690_P001 | Maize | plasma membrane | 85.66 | 85.07 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 85.66 | 85.07 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 84.97 | 84.97 |
| CDX90046 | Canola | cytosol, peroxisome, plasma membrane | 84.97 | 84.97 |
| CDY48920 | Canola | plasma membrane | 84.97 | 84.97 |
| Bra033248.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 84.97 | 84.97 |
| Solyc01g094690.2.1 | Tomato | nucleus | 84.62 | 84.91 |
| CDX89115 | Canola | plasma membrane | 66.78 | 84.89 |
| CDX74334 | Canola | cytosol, peroxisome, plasma membrane | 85.31 | 84.72 |
| EES11257 | Sorghum | cytosol, peroxisome, plasma membrane | 85.31 | 84.72 |
| Bra000974.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 85.31 | 84.72 |
| KRH59918 | Soybean | peroxisome | 84.97 | 84.67 |
| CDY07221 | Canola | cytosol, peroxisome, plasma membrane | 84.62 | 84.62 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 84.62 | 84.62 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 84.62 | 84.62 |
| CDX71738 | Canola | plasma membrane | 84.62 | 84.62 |
| Os02t0666200-01 | Rice | plasma membrane | 85.31 | 84.43 |
| CDX91911 | Canola | cytosol, peroxisome, plasma membrane | 84.97 | 84.38 |
| AT4G23400.1 | Thale cress | plasma membrane | 84.62 | 84.32 |
| Solyc03g096290.2.1 | Tomato | nucleus | 84.27 | 84.27 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 84.27 | 84.27 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 84.27 | 84.27 |
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 84.27 | 84.27 |
| Bra007603.1-P | Field mustard | plasma membrane | 84.27 | 84.27 |
| KRH41192 | Soybean | endoplasmic reticulum | 84.97 | 84.08 |
| CDY10936 | Canola | plasma membrane | 84.27 | 83.97 |
| Bra004950.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 83.92 | 83.92 |
| AT3G61430.1 | Thale cress | plasma membrane | 83.92 | 83.92 |
| Zm00001d051403_P001 | Maize | plasma membrane | 85.66 | 83.9 |
| TraesCS6B01G279200.1 | Wheat | plastid | 84.97 | 83.79 |
| Zm00001d051872_P001 | Maize | plasma membrane | 84.27 | 83.68 |
| CDX94185 | Canola | plasma membrane | 83.92 | 83.62 |
| Bra019307.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 83.92 | 83.62 |
| KRH77555 | Soybean | plasma membrane | 83.57 | 83.57 |
| Bra014437.1-P | Field mustard | plasma membrane | 83.57 | 83.57 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 84.27 | 83.39 |
| KRH27918 | Soybean | plasma membrane | 83.22 | 83.22 |
| TraesCS6D01G227500.1 | Wheat | golgi | 84.27 | 83.1 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 83.92 | 82.76 |
| KRH66037 | Soybean | golgi, peroxisome, plasma membrane | 81.47 | 82.04 |
| TraesCS6D01G389500.1 | Wheat | plasma membrane | 82.87 | 81.16 |
| OQU85985 | Sorghum | cytosol, peroxisome, plasma membrane | 82.17 | 81.03 |
| TraesCS6D01G389400.1 | Wheat | plasma membrane | 82.52 | 80.82 |
| TraesCS6B01G450200.1 | Wheat | plastid | 82.52 | 80.82 |
| TraesCS6B01G450000.1 | Wheat | unclear | 82.52 | 80.82 |
| TraesCS5D01G185400.1 | Wheat | plasma membrane | 82.17 | 80.48 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 82.17 | 80.48 |
| KRH00178 | Soybean | golgi, peroxisome, plasma membrane | 79.37 | 79.09 |
| CDY66913 | Canola | cytosol, mitochondrion, nucleus | 12.59 | 78.26 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 77.97 | 77.97 |
| CDY15165 | Canola | plastid | 86.36 | 76.23 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 81.82 | 75.24 |
| AT2G45960.3 | Thale cress | golgi, peroxisome, plasma membrane | 78.32 | 74.42 |
| EER89434 | Sorghum | peroxisome | 76.92 | 74.32 |
| TraesCS2D01G404800.2 | Wheat | golgi, peroxisome, plasma membrane | 80.42 | 73.25 |
| Solyc09g007770.2.1 | Tomato | nucleus | 65.03 | 71.81 |
| Solyc02g083510.2.1 | Tomato | nucleus | 63.64 | 70.27 |
| Solyc10g084120.1.1 | Tomato | nucleus | 67.13 | 68.33 |
| Solyc06g011350.2.1 | Tomato | nucleus | 66.43 | 67.86 |
| Solyc10g055630.1.1 | Tomato | nucleus, plastid | 66.08 | 66.78 |
| TraesCS2A01G407700.2 | Wheat | golgi, peroxisome, plasma membrane | 67.13 | 66.44 |
| Solyc01g111660.2.1 | Tomato | nucleus | 65.73 | 66.43 |
| Solyc11g069430.1.1 | Tomato | plastid | 66.43 | 66.2 |
| KRH75838 | Soybean | golgi, peroxisome, plasma membrane | 79.37 | 62.53 |
| Solyc09g007760.2.1 | Tomato | extracellular | 66.08 | 61.76 |
| Solyc05g055990.2.1 | Tomato | nucleus, plasma membrane | 58.04 | 57.44 |
| Solyc12g044330.1.1 | Tomato | plastid | 30.07 | 34.68 |
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 30.07 | 34.4 |
| Solyc06g072130.2.1 | Tomato | extracellular | 30.77 | 33.98 |
| Solyc10g083880.1.1 | Tomato | plastid | 28.67 | 33.06 |
| Solyc06g075650.2.1 | Tomato | endoplasmic reticulum | 28.32 | 32.02 |
| Solyc06g066560.1.1 | Tomato | mitochondrion | 30.07 | 31.5 |
| Solyc06g074820.2.1 | Tomato | plastid | 26.92 | 30.8 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 27.97 | 30.77 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 25.87 | 29.96 |
| Solyc03g093230.2.1 | Tomato | plastid | 25.17 | 28.69 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | EMBL:AB845607 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 |
| GO:GO:0006833 | GO:GO:0008150 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 |
| PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF169 | UniProt:Q08451 | SUPFAM:SSF81338 |
| EnsemblPlantsGene:Solyc08g081190.2 | EnsemblPlants:Solyc08g081190.2.1 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0000136FB6 | UniProt:V5YN05 |
| EMBL:X73847 | EMBL:X73848 | : | : | : | : |
Description
Probable aquaporin PIP-type pTOM75 [Source:UniProtKB/Swiss-Prot;Acc:Q08451]
Coordinates
chr8:+:64261665..64265015
Molecular Weight (calculated)
30754.6 Da
IEP (calculated)
8.312
GRAVY (calculated)
0.385
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENKEEDVK LGANKFRETQ PLGTAAQTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFM ATFLFLYITI LTVMGLKRSD SLCSSVGIQG VAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMVMQ CLGAICGAGV VKGFMVGPYQ RLGGGANVVN PGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNDE HAWNDHWIFW VGPMIGAALA AIYHQIIIRA MPFHRS
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMVMQ CLGAICGAGV VKGFMVGPYQ RLGGGANVVN PGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNDE HAWNDHWIFW VGPMIGAALA AIYHQIIIRA MPFHRS
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.