Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH16406
KRH22653
KRH26664
KRH40927
KRH51390
KRH60692

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 KRH16406 AT2G16850.1 21798944
AT1G01620.1 KRH51390 AT2G16850.1 21798944
AT1G01620.1 KRH60692 AT2G16850.1 21798944
AT1G01620.1 KRH22653 AT5G22290.1 21798944
AT1G01620.1 KRH26664 AT5G22290.1 21798944
AT4G00430.1 KRH16406 AT2G16850.1 21798944
AT4G00430.1 KRH51390 AT2G16850.1 21798944
AT4G00430.1 KRH60692 AT2G16850.1 21798944
AT4G00430.1 KRH40927 AT4G24090.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH59918 Soybean peroxisome 97.58 98.26
KRH27918 Soybean plasma membrane 92.39 93.36
KRH77555 Soybean plasma membrane 92.04 93.01
VIT_02s0025g03390.t01 Wine grape peroxisome 89.62 90.24
VIT_15s0046g02420.t01 Wine grape peroxisome 88.58 89.51
AT4G23400.1 Thale cress plasma membrane 87.54 88.15
CDX89115 Canola plasma membrane 68.17 87.56
CDY10936 Canola plasma membrane 86.85 87.46
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 86.51 87.41
Bra032644.1-P Field mustard plasma membrane 86.51 87.41
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 86.51 87.11
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 86.51 87.11
CDX71738 Canola plasma membrane 86.16 87.06
CDX83385 Canola cytosol, peroxisome, plasma membrane 86.16 87.06
CDY66912 Canola extracellular 61.94 86.89
KRH31119 Soybean endoplasmic reticulum 86.85 86.85
CDX74777 Canola cytosol, peroxisome, plasma membrane 85.81 86.71
AT3G61430.1 Thale cress plasma membrane 85.81 86.71
CDX95670 Canola cytosol, peroxisome, plasma membrane 85.81 86.71
CDY48920 Canola plasma membrane 85.81 86.71
CDY18886 Canola cytosol, peroxisome, plasma membrane 85.81 86.71
CDY38017 Canola plasma membrane 85.81 86.71
PGSC0003DMT400012780 Potato cytosol, peroxisome, plasma membrane 86.16 86.46
PGSC0003DMT400014809 Potato peroxisome 85.81 86.41
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 85.47 86.36
CDY51161 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDY27346 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
Bra007603.1-P Field mustard plasma membrane 85.47 86.36
CDY07221 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDX90046 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDY37078 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDX94185 Canola plasma membrane 85.47 86.06
Bra014437.1-P Field mustard plasma membrane 85.12 86.01
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 85.12 86.01
KRH66037 Soybean golgi, peroxisome, plasma membrane 84.43 85.92
CDX74334 Canola cytosol, peroxisome, plasma membrane 85.47 85.76
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 85.47 85.76
Solyc12g056220.1.1 Tomato plastid 85.47 85.76
CDX91911 Canola cytosol, peroxisome, plasma membrane 85.12 85.42
Solyc08g008050.2.1 Tomato peroxisome 84.78 85.37
Solyc01g094690.2.1 Tomato nucleus 84.08 85.26
Solyc08g081190.2.1 Tomato plastid 84.08 84.97
PGSC0003DMT400000151 Potato cytosol, peroxisome, plasma membrane 83.05 84.21
KRH14983 Soybean mitochondrion 83.39 83.39
KRH00178 Soybean golgi, peroxisome, plasma membrane 82.7 83.28
PGSC0003DMT400032134 Potato cytosol, peroxisome, plasma membrane 82.01 82.87
CDY66913 Canola cytosol, mitochondrion, nucleus 13.15 82.61
VIT_15s0046g02410.t01 Wine grape plasma membrane 81.66 82.52
CDY15165 Canola plastid 86.16 76.85
KRH73156 Soybean golgi, peroxisome, plasma membrane 84.43 76.49
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 78.55 75.42
KRG97766 Soybean endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 33.56 72.39
TraesCS2A01G407700.2 Wheat golgi, peroxisome, plasma membrane 67.47 67.47
KRH60692 Soybean mitochondrion 64.01 67.27
KRH70183 Soybean mitochondrion 65.74 66.67
KRH08523 Soybean plasma membrane 65.74 66.67
KRH08522 Soybean plasma membrane 65.74 66.67
KRG91899 Soybean plasma membrane 65.4 66.55
KRH25011 Soybean mitochondrion 65.74 66.43
KRG95980 Soybean plasma membrane 65.4 66.32
KRH70184 Soybean plasma membrane 65.4 66.32
KRH29919 Soybean mitochondrion 65.4 66.08
KRH22889 Soybean golgi, peroxisome, plasma membrane 65.05 65.51
KRH51390 Soybean plasma membrane 62.98 65.47
KRH26410 Soybean golgi, peroxisome, plasma membrane 64.71 65.16
KRH67688 Soybean plasma membrane 64.36 65.03
KRH75838 Soybean golgi, peroxisome, plasma membrane 81.66 65.01
KRH34875 Soybean plasma membrane 65.74 64.19
KRH16406 Soybean extracellular 33.56 63.4
KRG93712 Soybean plasma membrane, vacuole 29.41 35.87
KRH23420 Soybean plasma membrane, vacuole 30.1 35.22
KRH09912 Soybean endoplasmic reticulum, plasma membrane, vacuole 30.1 35.22
KRH44312 Soybean extracellular 29.76 34.68
KRH47241 Soybean mitochondrion 29.41 34.27
KRH34280 Soybean endoplasmic reticulum 30.1 34.25
KRH70511 Soybean cytosol 29.41 33.73
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 29.76 33.73
KRH38823 Soybean nucleus 29.76 33.73
KRG92517 Soybean cytosol 29.41 33.46
KRH77347 Soybean mitochondrion 28.37 32.93
KRH28112 Soybean mitochondrion 28.37 32.93
KRH52727 Soybean cytosol 28.03 32.93
KRH01591 Soybean cytosol 28.37 32.54
KRH23017 Soybean cytosol, plasma membrane, vacuole 28.37 32.54
KRH62059 Soybean cytosol, plasma membrane, vacuole 27.68 32.52
KRH10300 Soybean endoplasmic reticulum, extracellular 17.65 31.88
KRH24847 Soybean endoplasmic reticulum, plasma membrane, vacuole 26.99 31.84
KRH29856 Soybean cytosol, plasma membrane, vacuole 27.68 31.75
KRH36204 Soybean cytosol, extracellular, mitochondrion, plasma membrane 27.34 31.35
KRH67767 Soybean mitochondrion 26.99 31.2
KRG96046 Soybean nucleus 26.99 31.2
KRH19959 Soybean mitochondrion 26.3 30.4
KRG90553 Soybean extracellular 25.26 30.04
KRH23943 Soybean plasma membrane 17.3 27.32
KRH39857 Soybean plastid 23.18 26.59
Protein Annotations
Gene3D:1.20.1080.10EntrezGene:100780356MapMan:24.3.1.2UniProt:A0A0R0IM08EMBL:ACUP02004753InterPro:Aquaporin-like
InterPro:Aquaporin_transptrEnsemblPlantsGene:GLYMA_08G015300GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR023271
EnsemblPlants:KRH41192ProteinID:KRH41192ProteinID:KRH41192.1InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF169SUPFAM:SSF81338TIGRFAMs:TIGR00861
TMHMM:TMhelixUniParc:UPI00019D342C::::
Description
hypothetical protein
Coordinates
chr8:+:1204381..1206158
Molecular Weight (calculated)
30897.5 Da
IEP (calculated)
8.581
GRAVY (calculated)
0.371
Length
289 amino acids
Sequence
(BLAST)
001: MESKEEDVNV GANKFSERQP IGTAAQGGGD KDYKEAPPAP LFEPGELKSW SFYRAGIAEF VATFLFLYIT ILTVMGVNRS PSKCASVGIQ GIAWAFGGMI
101: FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRALFYIIM QCLGAICGAG VVKGFEGNAN YELFKGGANF VNSGYTKGDG LGAEIVGTFV LVYTVFSATD
201: AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAIIYN RDHAWDDQWI FWVGPFIGAA LAAVYHQIVI RAIPFKTRA
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.