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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g111660.2.1
Solyc06g011350.2.1
Solyc06g074170.2.1
Solyc08g083010.2.1
Solyc10g084120.1.1
Solyc11g068750.1.1
Solyc11g069430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT1G01620.1 Solyc06g011350.2.1 AT2G39010.1 21798944
AT1G01620.1 Solyc11g069430.1.1 AT2G39010.1 21798944
AT1G01620.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G01620.1 Solyc11g068750.1.1 AT5G22290.1 21798944
AT4G00430.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G00430.1 Solyc08g083010.2.1 AT4G24090.1 21798944
AT4G23400.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G23400.1 Solyc01g111660.2.1 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000151 Potato cytosol, peroxisome, plasma membrane 98.95 98.95
GSMUA_AchrUn_... Banana extracellular 60.35 90.53
GSMUA_Achr5P12400_001 Banana extracellular 59.65 89.47
TraesCS6B01G398000.1 Wheat extracellular 40.0 89.06
GSMUA_Achr8P11540_001 Banana extracellular 58.95 88.42
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 88.42 88.11
Bra032644.1-P Field mustard plasma membrane 88.42 88.11
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 88.42 87.5
AT4G23400.1 Thale cress plasma membrane 88.07 87.46
CDY38017 Canola plasma membrane 87.72 87.41
VIT_15s0046g02420.t01 Wine grape peroxisome 87.72 87.41
Os04t0559700-01 Rice plasma membrane 88.07 87.15
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 87.72 87.11
CDY51161 Canola cytosol, peroxisome, plasma membrane 87.37 87.06
CDY07221 Canola cytosol, peroxisome, plasma membrane 87.37 87.06
CDY66912 Canola extracellular 62.81 86.89
GSMUA_AchrUn_... Banana extracellular 57.89 86.84
EES11257 Sorghum cytosol, peroxisome, plasma membrane 87.72 86.81
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 87.02 86.71
CDY48920 Canola plasma membrane 87.02 86.71
CDY37078 Canola cytosol, peroxisome, plasma membrane 87.02 86.71
CDY27346 Canola cytosol, peroxisome, plasma membrane 87.02 86.71
CDY18886 Canola cytosol, peroxisome, plasma membrane 87.02 86.71
AT3G61430.1 Thale cress plasma membrane 87.02 86.71
CDX90046 Canola cytosol, peroxisome, plasma membrane 87.02 86.71
CDX83385 Canola cytosol, peroxisome, plasma membrane 87.02 86.71
CDX89115 Canola plasma membrane 68.42 86.67
TraesCS6B01G279200.1 Wheat plastid 88.07 86.55
HORVU6Hr1G064140.1 Barley golgi, peroxisome, plasma membrane 88.07 86.55
CDX95670 Canola cytosol, peroxisome, plasma membrane 86.67 86.36
CDX74777 Canola cytosol, peroxisome, plasma membrane 86.67 86.36
Bra007603.1-P Field mustard plasma membrane 86.67 86.36
CDX71738 Canola plasma membrane 86.67 86.36
TraesCS6D01G227500.1 Wheat golgi 87.72 86.21
Os02t0666200-01 Rice plasma membrane 87.37 86.16
EES07484 Sorghum plasma membrane 87.37 86.16
CDX74334 Canola cytosol, peroxisome, plasma membrane 87.02 86.11
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 87.02 86.11
CDY10936 Canola plasma membrane 86.67 86.06
KRH77555 Soybean plasma membrane 86.32 86.01
KRH27918 Soybean plasma membrane 86.32 86.01
Zm00001d017526_P001 Maize plasma membrane 87.02 85.81
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 87.02 85.81
Solyc12g056220.1.1 Tomato plastid 86.67 85.76
Zm00001d002690_P001 Maize plasma membrane 86.67 85.76
CDX91911 Canola cytosol, peroxisome, plasma membrane 86.67 85.76
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 86.32 85.71
Solyc03g096290.2.1 Tomato nucleus 85.96 85.66
CDX94185 Canola plasma membrane 85.96 85.37
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 85.61 85.31
Zm00001d051403_P001 Maize plasma membrane 87.37 85.27
Bra014437.1-P Field mustard plasma membrane 85.26 84.97
KRH66037 Soybean golgi, peroxisome, plasma membrane 84.56 84.86
Zm00001d051872_P001 Maize plasma membrane 85.61 84.72
Solyc08g081190.2.1 Tomato plastid 84.91 84.62
Solyc08g008050.2.1 Tomato peroxisome 84.91 84.32
KRH41192 Soybean endoplasmic reticulum 85.26 84.08
KRH59918 Soybean peroxisome 84.56 83.97
VIT_02s0025g03390.t01 Wine grape peroxisome 84.56 83.97
TraesCS6B01G450000.1 Wheat unclear 85.96 83.9
TraesCS6D01G389400.1 Wheat plasma membrane 85.96 83.9
TraesCS6D01G389500.1 Wheat plasma membrane 85.96 83.9
TraesCS6B01G450200.1 Wheat plastid 85.61 83.56
TraesCS5D01G185400.1 Wheat plasma membrane 85.26 83.22
TraesCS5B01G178700.1 Wheat plasma membrane 85.26 83.22
KRH00178 Soybean golgi, peroxisome, plasma membrane 83.51 82.93
OQU85985 Sorghum cytosol, peroxisome, plasma membrane 84.21 82.76
VIT_15s0046g02410.t01 Wine grape plasma membrane 80.7 80.42
CDY66913 Canola cytosol, mitochondrion, nucleus 12.63 78.26
HORVU5Hr1G055200.4 Barley golgi, plastid 85.26 78.14
CDY15165 Canola plastid 88.07 77.47
EER89434 Sorghum peroxisome 78.6 75.68
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 79.65 75.42
TraesCS2D01G404800.2 Wheat golgi, peroxisome, plasma membrane 82.11 74.52
Solyc09g007770.2.1 Tomato nucleus 65.26 71.81
Solyc10g084120.1.1 Tomato nucleus 68.42 69.39
Solyc02g083510.2.1 Tomato nucleus 61.75 67.95
Solyc06g011350.2.1 Tomato nucleus 66.67 67.86
TraesCS2A01G407700.2 Wheat golgi, peroxisome, plasma membrane 68.07 67.13
Solyc11g069430.1.1 Tomato plastid 66.67 66.2
Solyc01g111660.2.1 Tomato nucleus 65.61 66.08
Solyc10g055630.1.1 Tomato nucleus, plastid 65.26 65.72
KRH75838 Soybean golgi, peroxisome, plasma membrane 82.81 65.01
Solyc09g007760.2.1 Tomato extracellular 66.67 62.09
Solyc05g055990.2.1 Tomato nucleus, plasma membrane 57.89 57.09
Solyc12g044330.1.1 Tomato plastid 31.93 36.69
Solyc10g083880.1.1 Tomato plastid 30.18 34.68
Solyc06g060760.2.1 Tomato endoplasmic reticulum 30.18 34.4
Solyc06g075650.2.1 Tomato endoplasmic reticulum 30.53 34.39
Solyc06g072130.2.1 Tomato extracellular 30.88 33.98
Solyc06g074820.2.1 Tomato plastid 29.47 33.6
Solyc06g066560.1.1 Tomato mitochondrion 31.93 33.33
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 29.12 31.92
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 27.37 31.58
Solyc03g093230.2.1 Tomato plastid 26.67 30.28
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EMBL:AB845605InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810
GO:GO:0006833GO:GO:0008150GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021
GO:GO:0034220GO:GO:0055085InterPro:IPR023271UniProt:K4AZL0InterPro:MIPInterPro:MIP_CS
PFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF169SUPFAM:SSF81338
EnsemblPlantsGene:Solyc01g094690.2EnsemblPlants:Solyc01g094690.2.1TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0001B3695C:
Description
Plasmamembrane intrinsic protein 12 [Source:UniProtKB/TrEMBL;Acc:K4AZL0]
Coordinates
chr1:+:86136714..86139468
Molecular Weight (calculated)
30484.0 Da
IEP (calculated)
8.838
GRAVY (calculated)
0.378
Length
285 amino acids
Sequence
(BLAST)
001: MEGKEEDVKV GANKYSERQP LGTSAQSKDY KEAPPAPLFE AGELHSWSFW RAGIAEFMAT FLFLYITVLT VMGYSRANSK CSTVGVQGIA WAFGGMIFAL
101: VYCTAGISGG HINPAVTFGL FLARKLSLTR AVFYIVMQCL GAICGAGVVK GFQPSLFETK GGGANVVAHG YTKGDGLGAE IIGTFVLVYT VFSATDAKRN
201: ARDSHVPILA PLPIGFAVFL VHLATIPITG TGINPARSLG AAIVYNKEHA WDDHWIFWVG PFIGAALAAL YHQVIIRAIP FKSGN
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.