Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:peroxisome, secretory
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plasma membrane: 23161856
plastid: 22160430
golgi: 25769308
unclear: 25769308
gfp PMID: 23161856 doi
W Hu, Q Yuan, Y Wang, R Cai, X Deng, J Wang, S Zhou, M Chen, L Chen, C Huang, Z Ma, G Yang, G He
The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research Wuhan Part, Key Laboratory of Molecular Biophysics MoE, College of Life Science and Technology, Huazhong University of Science & Technology, Wuhan 430074, PR China.
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 TraesCS2A01G065700.1 AT2G16850.1 21798944
AT1G01620.1 TraesCS2B01G077700.1 AT2G16850.1 21798944
AT1G01620.1 TraesCS2D01G063900.1 AT2G16850.1 21798944
AT1G01620.1 TraesCS2A01G198500.1 AT2G37180.1 21798944
AT1G01620.1 TraesCS2B01G225900.1 AT2G37180.1 21798944
AT1G01620.1 TraesCS2D01G206300.1 AT2G37180.1 21798944
AT1G01620.1 TraesCS2A01G198500.1 AT3G54820.1 21798944
AT1G01620.1 TraesCS2B01G225900.1 AT3G54820.1 21798944
AT1G01620.1 TraesCS2D01G206300.1 AT3G54820.1 21798944
AT4G00430.1 TraesCS2A01G065700.1 AT2G16850.1 21798944
AT4G00430.1 TraesCS2B01G077700.1 AT2G16850.1 21798944
AT4G00430.1 TraesCS2D01G063900.1 AT2G16850.1 21798944
AT4G00430.1 TraesCS2A01G198500.1 AT2G37180.1 21798944
AT4G00430.1 TraesCS2B01G225900.1 AT2G37180.1 21798944
AT4G00430.1 TraesCS2D01G206300.1 AT2G37180.1 21798944
AT4G00430.1 TraesCS2A01G198500.1 AT3G54820.1 21798944
AT4G00430.1 TraesCS2B01G225900.1 AT3G54820.1 21798944
AT4G00430.1 TraesCS2D01G206300.1 AT3G54820.1 21798944
AT4G00430.1 TraesCS5A01G316300.1 AT4G24090.1 21798944
AT4G00430.1 TraesCS5B01G316800.1 AT4G24090.1 21798944
AT4G00430.1 TraesCS5D01G322500.1 AT4G24090.1 21798944
AT4G23400.1 TraesCS2A01G198500.1 AT2G37180.1 21798944
AT4G23400.1 TraesCS2B01G225900.1 AT2G37180.1 21798944
AT4G23400.1 TraesCS2D01G206300.1 AT2G37180.1 21798944
AT4G23400.1 TraesCS2A01G198500.1 AT3G54820.1 21798944
AT4G23400.1 TraesCS2B01G225900.1 AT3G54820.1 21798944
AT4G23400.1 TraesCS2D01G206300.1 AT3G54820.1 21798944
AT4G23400.1 TraesCS2A01G065700.1 AT4G35100.1 21798944
AT4G23400.1 TraesCS2B01G077700.1 AT4G35100.1 21798944
AT4G23400.1 TraesCS2D01G063900.1 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G398000.1 Wheat extracellular 44.1 99.22
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 98.61 98.27
TraesCS6B01G279200.1 Wheat plastid 93.75 93.1
AT4G23400.1 Thale cress plasma membrane 88.54 88.85
Solyc01g094690.2.1 Tomato nucleus 87.5 88.42
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 87.5 87.8
CDY10936 Canola plasma membrane 87.5 87.8
CDX94185 Canola plasma membrane 87.5 87.8
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 87.15 87.76
CDY38017 Canola plasma membrane 87.15 87.76
CDY66912 Canola extracellular 62.5 87.38
CDX89115 Canola plasma membrane 68.06 87.11
Solyc03g096290.2.1 Tomato nucleus 86.46 87.06
CDY51161 Canola cytosol, peroxisome, plasma membrane 86.46 87.06
CDX90046 Canola cytosol, peroxisome, plasma membrane 86.46 87.06
CDX74334 Canola cytosol, peroxisome, plasma membrane 86.81 86.81
CDY07221 Canola cytosol, peroxisome, plasma membrane 86.11 86.71
CDX83385 Canola cytosol, peroxisome, plasma membrane 86.11 86.71
CDY27346 Canola cytosol, peroxisome, plasma membrane 86.11 86.71
CDY37078 Canola cytosol, peroxisome, plasma membrane 86.11 86.71
CDX91911 Canola cytosol, peroxisome, plasma membrane 86.46 86.46
CDX74777 Canola cytosol, peroxisome, plasma membrane 85.76 86.36
CDX95670 Canola cytosol, peroxisome, plasma membrane 85.76 86.36
TraesCS5B01G178700.1 Wheat plasma membrane 87.5 86.3
TraesCS6B01G450000.1 Wheat unclear 87.5 86.3
TraesCS6B01G450200.1 Wheat plastid 87.5 86.3
CDY18886 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
AT3G61430.1 Thale cress plasma membrane 85.42 86.01
CDX71738 Canola plasma membrane 85.07 85.66
Solyc08g081190.2.1 Tomato plastid 85.07 85.66
Solyc12g056220.1.1 Tomato plastid 85.42 85.42
CDY48920 Canola plasma membrane 84.72 85.31
CDY66913 Canola cytosol, mitochondrion, nucleus 13.54 84.78
Solyc08g008050.2.1 Tomato peroxisome 84.38 84.67
TraesCS2D01G404800.2 Wheat golgi, peroxisome, plasma membrane 92.01 84.39
CDY15165 Canola plastid 86.81 77.16
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 79.17 75.75
TraesCS2B01G396800.1 Wheat golgi 67.36 66.9
TraesCS6B01G259000.1 Wheat golgi, peroxisome, plasma membrane 65.97 66.43
TraesCS2B01G077700.1 Wheat plasma membrane 65.28 66.2
TraesCS2B01G396700.2 Wheat plasma membrane 67.36 65.76
TraesCS2B01G225900.1 Wheat golgi 65.62 65.17
TraesCS5B01G570800.1 Wheat golgi, peroxisome, plasma membrane 61.46 62.77
TraesCS7B01G002000.1 Wheat golgi, peroxisome, plasma membrane 61.46 62.32
TraesCS5B01G567500.1 Wheat golgi, peroxisome, plasma membrane 59.72 59.52
TraesCS7B01G003900.1 Wheat golgi, peroxisome, plasma membrane 59.72 59.11
TraesCS7B01G003800.1 Wheat golgi, peroxisome, plasma membrane 59.03 58.82
TraesCS5B01G332500.1 Wheat plasma membrane 59.38 58.76
TraesCS5B01G567600.1 Wheat golgi, peroxisome, plasma membrane 59.38 58.76
TraesCS4B01G362300.1 Wheat golgi, peroxisome, plasma membrane 59.38 58.56
TraesCS6B01G114400.1 Wheat golgi, peroxisome, plasma membrane 57.99 56.61
TraesCS7B01G096000.1 Wheat golgi, peroxisome, plasma membrane 54.51 51.64
TraesCS4B01G027600.1 Wheat plasma membrane 48.96 48.45
TraesCS7B01G243000.1 Wheat plasma membrane 29.51 34.27
TraesCS3B01G608500.1 Wheat plasma membrane 29.17 33.33
TraesCS2B01G433200.1 Wheat plasma membrane 28.47 33.06
TraesCS6B01G275100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 28.47 32.93
TraesCS4B01G310900.1 Wheat unclear 27.78 32.0
TraesCS3B01G182200.1 Wheat endoplasmic reticulum, extracellular, vacuole 26.04 29.88
TraesCS2B01G433300.1 Wheat endoplasmic reticulum 25.69 29.84
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 27.43 29.81
TraesCS1B01G182200.1 Wheat golgi 26.39 28.9
TraesCS3B01G182400.1 Wheat plasma membrane 23.26 27.02
TraesCS4B01G349500.1 Wheat plasma membrane 22.22 25.1
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085
InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221
PANTHER:PTHR19139PANTHER:PTHR19139:SF262SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixEnsemblPlantsGene:TraesCS2B01G425600
EnsemblPlants:TraesCS2B01G425600.1TIGR:cd00333SEG:seg:::
Description
No Description!
Coordinates
chr2B:-:611282789..611285251
Molecular Weight (calculated)
30684.4 Da
IEP (calculated)
9.042
GRAVY (calculated)
0.378
Length
288 amino acids
Sequence
(BLAST)
001: MEGKEEDVRL GANKYSERQP IGTAAQGSED KDYKEPPPAP LFEPGELKSW SFYRAGIAEF MATFLFLYVT ILTVMGYSGA TSKCATVGIQ GIAWSFGGMI
101: FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRAVFYIIM QCLGAICGAG VVKGFQQGLY MGNGGGANVV APGYTKGSGL GAEIIGTFVL VYTVFSATDA
201: KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYNR EHAWSDHWIF WVGPFIGAAL AAVYHQVVIR AIPFKTKS
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.