Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G389400.1 | Wheat | plasma membrane | 100.0 | 100.0 |
| TraesCS6A01G405600.1 | Wheat | plasma membrane | 100.0 | 100.0 |
| TraesCS6B01G450200.1 | Wheat | plastid | 98.29 | 98.29 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 97.26 | 97.26 |
| TraesCS6B01G279200.1 | Wheat | plastid | 88.36 | 88.97 |
| GSMUA_Achr8P11540_001 | Banana | extracellular | 57.88 | 88.95 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 38.7 | 88.28 |
| CDX89115 | Canola | plasma membrane | 67.81 | 88.0 |
| GSMUA_AchrUn_... | Banana | extracellular | 57.19 | 87.89 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 86.3 | 87.5 |
| CDY66912 | Canola | extracellular | 61.64 | 87.38 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 85.27 | 87.06 |
| AT4G23400.1 | Thale cress | plasma membrane | 85.27 | 86.76 |
| CDY10936 | Canola | plasma membrane | 84.93 | 86.41 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 84.59 | 86.36 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 84.25 | 86.01 |
| Solyc03g096290.2.1 | Tomato | nucleus | 84.25 | 86.01 |
| CDY38017 | Canola | plasma membrane | 84.25 | 86.01 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 84.25 | 86.01 |
| AT3G61430.1 | Thale cress | plasma membrane | 84.25 | 86.01 |
| Solyc01g094690.2.1 | Tomato | nucleus | 83.9 | 85.96 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 84.93 | 85.81 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 83.9 | 85.66 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 83.9 | 85.66 |
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 83.9 | 85.66 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 83.9 | 85.37 |
| CDY48920 | Canola | plasma membrane | 83.56 | 85.31 |
| CDY51161 | Canola | cytosol, peroxisome, plasma membrane | 83.56 | 85.31 |
| CDX90046 | Canola | cytosol, peroxisome, plasma membrane | 83.56 | 85.31 |
| CDX71738 | Canola | plasma membrane | 83.56 | 85.31 |
| CDX74334 | Canola | cytosol, peroxisome, plasma membrane | 83.56 | 84.72 |
| CDX94185 | Canola | plasma membrane | 83.22 | 84.67 |
| CDY07221 | Canola | cytosol, peroxisome, plasma membrane | 82.88 | 84.62 |
| CDX91911 | Canola | cytosol, peroxisome, plasma membrane | 83.22 | 84.38 |
| Solyc12g056220.1.1 | Tomato | plastid | 82.53 | 83.68 |
| Solyc08g008050.2.1 | Tomato | peroxisome | 81.85 | 83.28 |
| Solyc08g081190.2.1 | Tomato | plastid | 80.82 | 82.52 |
| EER89434 | Sorghum | peroxisome | 79.45 | 78.38 |
| CDY15165 | Canola | plastid | 83.9 | 75.62 |
| AT2G45960.3 | Thale cress | golgi, peroxisome, plasma membrane | 76.71 | 74.42 |
| CDY66913 | Canola | cytosol, mitochondrion, nucleus | 11.64 | 73.91 |
| TraesCS2B01G077700.1 | Wheat | plasma membrane | 67.47 | 69.37 |
| TraesCS2B01G396800.1 | Wheat | golgi | 66.44 | 66.9 |
| TraesCS6B01G259000.1 | Wheat | golgi, peroxisome, plasma membrane | 65.07 | 66.43 |
| TraesCS2B01G225900.1 | Wheat | golgi | 65.75 | 66.21 |
| TraesCS2B01G396700.2 | Wheat | plasma membrane | 66.44 | 65.76 |
| TraesCS5B01G570800.1 | Wheat | golgi, peroxisome, plasma membrane | 62.33 | 64.54 |
| TraesCS7B01G002000.1 | Wheat | golgi, peroxisome, plasma membrane | 61.64 | 63.38 |
| TraesCS5B01G567500.1 | Wheat | golgi, peroxisome, plasma membrane | 59.25 | 59.86 |
| TraesCS5B01G332500.1 | Wheat | plasma membrane | 59.59 | 59.79 |
| TraesCS7B01G003800.1 | Wheat | golgi, peroxisome, plasma membrane | 58.9 | 59.52 |
| TraesCS7B01G003900.1 | Wheat | golgi, peroxisome, plasma membrane | 59.25 | 59.45 |
| TraesCS4B01G362300.1 | Wheat | golgi, peroxisome, plasma membrane | 59.25 | 59.25 |
| TraesCS5B01G567600.1 | Wheat | golgi, peroxisome, plasma membrane | 58.9 | 59.11 |
| TraesCS6B01G114400.1 | Wheat | golgi, peroxisome, plasma membrane | 56.51 | 55.93 |
| TraesCS7B01G096000.1 | Wheat | golgi, peroxisome, plasma membrane | 53.77 | 51.64 |
| TraesCS4B01G027600.1 | Wheat | plasma membrane | 48.29 | 48.45 |
| TraesCS7B01G243000.1 | Wheat | plasma membrane | 29.45 | 34.68 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 29.45 | 34.54 |
| TraesCS2B01G433200.1 | Wheat | plasma membrane | 29.11 | 34.27 |
| TraesCS3B01G608500.1 | Wheat | plasma membrane | 29.45 | 34.13 |
| TraesCS4B01G310900.1 | Wheat | unclear | 27.4 | 32.0 |
| TraesCS3B01G182200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 27.4 | 31.87 |
| TraesCS1B01G182200.1 | Wheat | golgi | 27.05 | 30.04 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 27.05 | 29.81 |
| TraesCS2B01G433300.1 | Wheat | endoplasmic reticulum | 25.0 | 29.44 |
| TraesCS3B01G182400.1 | Wheat | plasma membrane | 24.66 | 29.03 |
| TraesCS4B01G349500.1 | Wheat | plasma membrane | 22.6 | 25.88 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF262 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G450000 |
| EnsemblPlants:TraesCS6B01G450000.1 | TIGR:cd00333 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6B:+:708988737..708990296
Molecular Weight (calculated)
30877.4 Da
IEP (calculated)
8.302
GRAVY (calculated)
0.395
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEEDVRL GANRYSEHQP IGTAAQGGGA DEKDYKEPPP APFFEAGELT SWSFYRAGIA EFLATFLFLY ISVLTVMGVV GNPSGSKCGT VGIQGIAWSF
101: GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKLSLTRAVF YIVMQCLGAI CGAGVVKGFQ TTLYQGNGGG ANSVAPGYTK GDGLGAEIVG TFVLVYTVFS
201: ATDAKRSARD SHVPILAPLP IGFAVFLVHL ATIPITGTGI NPARSLGAAI IYNKKQAWDD HWIFWVGPFI GAALAAIYHV VVIRAIPFKS RD
101: GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKLSLTRAVF YIVMQCLGAI CGAGVVKGFQ TTLYQGNGGG ANSVAPGYTK GDGLGAEIVG TFVLVYTVFS
201: ATDAKRSARD SHVPILAPLP IGFAVFLVHL ATIPITGTGI NPARSLGAAI IYNKKQAWDD HWIFWVGPFI GAALAAIYHV VVIRAIPFKS RD
001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS
Arabidopsis Description
PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.