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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g111660.2.1
Solyc06g011350.2.1
Solyc06g074170.2.1
Solyc08g083010.2.1
Solyc10g084120.1.1
Solyc11g068750.1.1
Solyc11g069430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT1G01620.1 Solyc06g011350.2.1 AT2G39010.1 21798944
AT1G01620.1 Solyc11g069430.1.1 AT2G39010.1 21798944
AT1G01620.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G01620.1 Solyc11g068750.1.1 AT5G22290.1 21798944
AT4G00430.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G00430.1 Solyc08g083010.2.1 AT4G24090.1 21798944
AT4G23400.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G23400.1 Solyc01g111660.2.1 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014809 Potato peroxisome 97.56 97.56
Solyc12g056220.1.1 Tomato plastid 94.43 94.1
Solyc08g081190.2.1 Tomato plastid 93.73 94.06
GSMUA_AchrUn_... Banana extracellular 59.93 90.53
GSMUA_Achr5P12400_001 Banana extracellular 58.88 88.95
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 87.11 87.41
CDX83385 Canola cytosol, peroxisome, plasma membrane 87.11 87.41
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 87.11 87.11
CDX74777 Canola cytosol, peroxisome, plasma membrane 86.76 87.06
CDX95670 Canola cytosol, peroxisome, plasma membrane 86.76 87.06
CDY66912 Canola extracellular 62.37 86.89
CDY38017 Canola plasma membrane 86.41 86.71
Bra032644.1-P Field mustard plasma membrane 86.41 86.71
CDY37078 Canola cytosol, peroxisome, plasma membrane 86.41 86.71
CDY27346 Canola cytosol, peroxisome, plasma membrane 86.41 86.71
CDY18886 Canola cytosol, peroxisome, plasma membrane 86.41 86.71
CDX89115 Canola plasma membrane 67.94 86.67
VIT_02s0025g03390.t01 Wine grape peroxisome 86.41 86.41
CDY51161 Canola cytosol, peroxisome, plasma membrane 86.06 86.36
CDY48920 Canola plasma membrane 86.06 86.36
VIT_15s0046g02420.t01 Wine grape peroxisome 86.06 86.36
Os04t0559700-01 Rice plasma membrane 86.41 86.11
CDX90046 Canola cytosol, peroxisome, plasma membrane 85.71 86.01
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 85.71 86.01
CDX71738 Canola plasma membrane 85.71 86.01
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 85.71 86.01
TraesCS6B01G398000.1 Wheat extracellular 38.33 85.94
Zm00001d017526_P001 Maize plasma membrane 86.41 85.81
EES07484 Sorghum plasma membrane 86.41 85.81
GSMUA_AchrUn_... Banana extracellular 56.79 85.79
GSMUA_Achr8P11540_001 Banana extracellular 56.79 85.79
CDX74334 Canola cytosol, peroxisome, plasma membrane 86.06 85.76
Zm00001d002690_P001 Maize plasma membrane 86.06 85.76
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 86.06 85.76
Bra007603.1-P Field mustard plasma membrane 85.37 85.66
CDY07221 Canola cytosol, peroxisome, plasma membrane 85.37 85.66
EES11257 Sorghum cytosol, peroxisome, plasma membrane 85.71 85.42
CDX91911 Canola cytosol, peroxisome, plasma membrane 85.71 85.42
AT3G61430.1 Thale cress plasma membrane 85.02 85.31
AT4G23400.1 Thale cress plasma membrane 85.02 85.02
KRH59918 Soybean peroxisome 85.02 85.02
Bra014437.1-P Field mustard plasma membrane 84.67 84.97
Solyc01g094690.2.1 Tomato nucleus 84.32 84.91
KRH41192 Soybean endoplasmic reticulum 85.37 84.78
Os02t0666200-01 Rice plasma membrane 85.37 84.78
CDY10936 Canola plasma membrane 84.67 84.67
Zm00001d051403_P001 Maize plasma membrane 86.06 84.59
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 84.67 84.38
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 84.32 84.32
TraesCS6B01G279200.1 Wheat plastid 85.02 84.14
CDX94185 Canola plasma membrane 83.97 83.97
KRH77555 Soybean plasma membrane 83.62 83.92
Solyc03g096290.2.1 Tomato nucleus 83.62 83.92
KRH27918 Soybean plasma membrane 83.28 83.57
KRH66037 Soybean golgi, peroxisome, plasma membrane 82.58 83.45
TraesCS6D01G227500.1 Wheat golgi 84.32 83.45
HORVU6Hr1G064140.1 Barley golgi, peroxisome, plasma membrane 83.97 83.1
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 83.28 82.7
Zm00001d051872_P001 Maize plasma membrane 82.93 82.64
TraesCS6D01G389500.1 Wheat plasma membrane 83.62 82.19
TraesCS6D01G389400.1 Wheat plasma membrane 83.28 81.85
TraesCS6B01G450200.1 Wheat plastid 83.28 81.85
TraesCS6B01G450000.1 Wheat unclear 83.28 81.85
TraesCS5B01G178700.1 Wheat plasma membrane 82.93 81.51
TraesCS5D01G185400.1 Wheat plasma membrane 82.93 81.51
OQU85985 Sorghum cytosol, peroxisome, plasma membrane 81.88 81.03
KRH00178 Soybean golgi, peroxisome, plasma membrane 80.14 80.14
VIT_15s0046g02410.t01 Wine grape plasma membrane 79.09 79.37
CDY66913 Canola cytosol, mitochondrion, nucleus 12.54 78.26
CDY15165 Canola plastid 87.11 77.16
HORVU5Hr1G055200.4 Barley golgi, plastid 82.58 76.21
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 79.44 75.75
EER89434 Sorghum peroxisome 76.66 74.32
TraesCS2D01G404800.2 Wheat golgi, peroxisome, plasma membrane 78.4 71.66
Solyc09g007770.2.1 Tomato nucleus 64.46 71.43
Solyc06g011350.2.1 Tomato nucleus 67.94 69.64
Solyc10g084120.1.1 Tomato nucleus 67.94 69.39
Solyc02g083510.2.1 Tomato nucleus 62.02 68.73
Solyc01g111660.2.1 Tomato nucleus 66.9 67.84
Solyc11g069430.1.1 Tomato plastid 67.6 67.6
Solyc10g055630.1.1 Tomato nucleus, plastid 65.51 66.43
TraesCS2A01G407700.2 Wheat golgi, peroxisome, plasma membrane 66.55 66.09
KRH75838 Soybean golgi, peroxisome, plasma membrane 79.79 63.09
Solyc09g007760.2.1 Tomato extracellular 66.2 62.09
Solyc05g055990.2.1 Tomato nucleus, plasma membrane 57.84 57.44
Solyc12g044330.1.1 Tomato plastid 29.97 34.68
Solyc06g072130.2.1 Tomato extracellular 30.66 33.98
Solyc06g060760.2.1 Tomato endoplasmic reticulum 29.27 33.6
Solyc06g075650.2.1 Tomato endoplasmic reticulum 28.92 32.81
Solyc10g083880.1.1 Tomato plastid 28.22 32.66
Solyc06g074820.2.1 Tomato plastid 27.53 31.6
Solyc06g066560.1.1 Tomato mitochondrion 29.97 31.5
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 28.22 31.15
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 26.48 30.77
Solyc03g093230.2.1 Tomato plastid 25.44 29.08
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833
GO:GO:0008150GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0034220
GO:GO:0055085InterPro:IPR023271UniProt:K4CIU0InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF169SUPFAM:SSF81338EnsemblPlantsGene:Solyc08g008050.2
EnsemblPlants:Solyc08g008050.2.1TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI000276CA5E::
Description
No Description!
Coordinates
chr8:+:2541278..2544496
Molecular Weight (calculated)
30894.6 Da
IEP (calculated)
8.303
GRAVY (calculated)
0.356
Length
287 amino acids
Sequence
(BLAST)
001: MAENKEEDVN LGANKFREPQ PLGTSAQTDK DYKEPPPAPL YEPGELSSWS FYRAGIAEFM ATFLFLYITI LTVMGLKRSD SLCSSVGIQG VAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMVMQ CLGAICGAGV VKGFMQGPYQ RLGGGANVVQ PGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIFNQD QAWDDHWIFW FGPFIGAALA AIYHQIIIRA IPFKSRA
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.