Factsheet for GSMUA_AchrUn_randomP07520_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
extracellular 4
plasma membrane 2
vacuole 2
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02360_001
GSMUA_Achr1P07460_001
GSMUA_Achr1P26380_001
GSMUA_Achr2P11190_001
GSMUA_Achr5P11480_001
GSMUA_Achr9P00850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	GSMUA_Achr1P02360_001	AT2G16850.1	21798944
AT1G01620.1	GSMUA_Achr1P07460_001	AT2G16850.1	21798944
AT1G01620.1	GSMUA_Achr1P26380_001	AT2G16850.1	21798944
AT1G01620.1	GSMUA_Achr2P11190_001	AT2G16850.1	21798944
AT1G01620.1	GSMUA_Achr5P11480_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr1P02360_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr1P07460_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr1P26380_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr2P11190_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr5P11480_001	AT2G16850.1	21798944
AT4G00430.1	GSMUA_Achr9P00850_001	AT4G24090.1	21798944
AT4G23400.1	GSMUA_Achr1P02360_001	AT4G35100.1	21798944
AT4G23400.1	GSMUA_Achr1P07460_001	AT4G35100.1	21798944
AT4G23400.1	GSMUA_Achr1P26380_001	AT4G35100.1	21798944
AT4G23400.1	GSMUA_Achr2P11190_001	AT4G35100.1	21798944
AT4G23400.1	GSMUA_Achr5P11480_001	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	95.26	95.26
GSMUA_Achr5P12400_001	Banana	extracellular	94.21	94.21
GSMUA_Achr1P00370_001	Banana	extracellular	94.21	94.21
GSMUA_Achr2P03980_001	Banana	extracellular	93.68	93.68
GSMUA_AchrUn_...	Banana	extracellular	92.63	92.63
GSMUA_Achr8P11540_001	Banana	extracellular	92.11	92.11
GSMUA_Achr11P...	Banana	extracellular	96.32	85.51
GSMUA_Achr10P...	Banana	plasma membrane	96.32	85.51
CDY66912	Canola	extracellular	88.42	81.55
CDX89115	Canola	plasma membrane	90.0	76.0
KRG97766	Soybean	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	53.16	75.37
GSMUA_AchrUn_...	Banana	extracellular	76.84	74.87
GSMUA_Achr5P11480_001	Banana	plasma membrane	77.89	74.75
GSMUA_Achr8P18910_001	Banana	extracellular	76.84	74.49
GSMUA_Achr11P...	Banana	extracellular	76.84	74.49
GSMUA_Achr4P20780_001	Banana	extracellular	76.84	74.49
GSMUA_Achr8P33980_001	Banana	extracellular	75.79	72.36
GSMUA_Achr8P33990_001	Banana	extracellular	74.21	71.21
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	72.63	69.7
Os04t0559700-01	Rice	plasma membrane	96.32	63.54
GSMUA_Achr1P07460_001	Banana	extracellular	57.37	62.29
AT4G23400.1	Thale cress	plasma membrane	93.16	61.67
Solyc01g094690.2.1	Tomato	nucleus	90.53	60.35
CDY10936	Canola	plasma membrane	91.05	60.28
CDY38017	Canola	plasma membrane	90.53	60.14
Solyc08g008050.2.1	Tomato	peroxisome	90.53	59.93
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	90.0	59.79
CDY48920	Canola	plasma membrane	90.0	59.79
CDX71738	Canola	plasma membrane	90.0	59.79
CDX94185	Canola	plasma membrane	90.0	59.58
Solyc12g056220.1.1	Tomato	plastid	90.0	59.38
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	89.47	59.23
Solyc08g081190.2.1	Tomato	plastid	88.95	59.09
CDY51161	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
CDY37078	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
CDY27346	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
CDY07221	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
CDX83385	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
CDX74777	Canola	cytosol, peroxisome, plasma membrane	88.95	59.09
AT3G61430.1	Thale cress	plasma membrane	88.95	59.09
CDY18886	Canola	cytosol, peroxisome, plasma membrane	88.42	58.74
CDX95670	Canola	cytosol, peroxisome, plasma membrane	88.42	58.74
CDX74334	Canola	cytosol, peroxisome, plasma membrane	88.95	58.68
CDX90046	Canola	cytosol, peroxisome, plasma membrane	87.89	58.39
CDX91911	Canola	cytosol, peroxisome, plasma membrane	88.42	58.33
Solyc03g096290.2.1	Tomato	nucleus	86.84	57.69
PGSC0003DMT400064008	Potato	extracellular	33.68	57.14
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	40.0	53.9
GSMUA_Achr1P02360_001	Banana	unclear	78.42	52.84
CDY15165	Canola	plastid	90.0	52.78
GSMUA_Achr2P11190_001	Banana	plasma membrane	77.89	52.67
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	30.53	48.74
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	76.84	48.51
GSMUA_Achr1P26380_001	Banana	plasma membrane	70.53	47.69
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	38.95	29.13
GSMUA_Achr9P28940_001	Banana	plasma membrane	37.37	28.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	36.84	28.81
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	37.37	27.95
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	35.79	27.76
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	35.79	27.31
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	35.79	27.2
GSMUA_Achr10P...	Banana	plasma membrane	35.79	26.98
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	35.26	26.91
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	35.26	26.59
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	34.74	26.4
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	34.74	26.4
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	36.32	26.24
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	34.21	26.1
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	33.16	25.1
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	31.05	23.14
GSMUA_Achr1P13800_001	Banana	cytosol	28.95	21.65
CDY66913	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_AchrUn_randomG07520_001	EnsemblPlants:GSMUA_AchrUn_randomP07520_001	EnsemblPlants:GSMUA_AchrUn_randomT07520_001	InterPro:IPR023271	UniProt:M0U763
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF190	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002968D7F	:

Description

Probable aquaporin PIP1-2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07520_001]

Coordinates

chrchrUn_random:+:32391574..32392970

Molecular Weight (calculated)

20177.9 Da

IEP (calculated)

9.924

GRAVY (calculated)

0.576

Length

190 amino acids

Sequence
(BLAST)

001: MIFALVYCTA GISGGHINPA VTFGLFLARK LSLTRALFYM VMQCLGAICG AGVVKGYQKG LYESNGGGAN VVAPGYTKGD GLGAEIVGTF ILVYTVFSAT
101: DAKRNARDSH VPILAPLPIG FAVFLVHLAT IPITGTGINP ARSLGAAIIY NKKHAWDDHW IFWVGPFIGA ALAAIYHQIV IRAIPFKSRP

Best Arabidopsis Sequence Match ( AT1G01620.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS

Arabidopsis Description

PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.