Factsheet for GSMUA_Achr1P26380_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P02360_001
GSMUA_Achr1P07460_001
GSMUA_Achr1P20280_001
GSMUA_Achr1P26380_001
GSMUA_Achr2P11190_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P11480_001
GSMUA_Achr5P12400_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P11540_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr1P02360_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P07460_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P26380_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr2P11190_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr5P11480_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P33990_001	Banana	extracellular	54.09	76.77
GSMUA_Achr5P11480_001	Banana	plasma membrane	53.74	76.26
GSMUA_Achr8P33980_001	Banana	extracellular	53.74	75.88
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	52.67	74.75
Os04t0233400-01	Rice	plasma membrane	74.73	74.47
GSMUA_Achr11P...	Banana	extracellular	51.25	73.47
AT2G16850.1	Thale cress	plasma membrane	72.6	73.38
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	65.48	73.31
GSMUA_Achr1P02360_001	Banana	unclear	73.31	73.05
GSMUA_Achr8P18910_001	Banana	extracellular	50.89	72.96
GSMUA_Achr2P11190_001	Banana	plasma membrane	72.6	72.6
Solyc02g083510.2.1	Tomato	nucleus	66.9	72.59
AT4G35100.1	Thale cress	plasma membrane	72.24	72.5
GSMUA_Achr4P20780_001	Banana	extracellular	50.53	72.45
KRH60692	Soybean	mitochondrion	70.82	72.36
CDY52648	Canola	plasma membrane	72.24	72.24
CDX69112	Canola	plasma membrane	72.24	72.24
Bra017697.1-P	Field mustard	cytosol	72.24	72.24
Bra011585.1-P	Field mustard	plasma membrane	72.24	72.24
GSMUA_Achr1P00370_001	Banana	extracellular	48.75	72.11
VIT_03s0038g02520.t01	Wine grape	plasma membrane	71.53	72.04
CDX76314	Canola	cytosol	71.89	71.89
CDX72515	Canola	golgi, plasma membrane	64.77	71.65
CDY17511	Canola	plasma membrane	71.53	71.53
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.17	71.17
GSMUA_Achr2P03980_001	Banana	extracellular	48.04	71.05
GSMUA_AchrUn_...	Banana	extracellular	48.04	71.05
GSMUA_Achr8P11540_001	Banana	extracellular	48.04	71.05
KRH51390	Soybean	plasma membrane	70.11	70.86
GSMUA_AchrUn_...	Banana	extracellular	49.11	70.77
GSMUA_Achr5P12400_001	Banana	extracellular	47.69	70.53
GSMUA_AchrUn_...	Banana	extracellular	47.69	70.53
PGSC0003DMT400015824	Potato	plasma membrane	70.82	70.32
GSMUA_AchrUn_...	Banana	extracellular	47.33	70.0
Solyc01g111660.2.1	Tomato	nucleus	70.46	69.96
GSMUA_Achr1P07460_001	Banana	extracellular	43.06	69.14
GSMUA_Achr11P...	Banana	extracellular	52.31	68.69
Solyc10g055630.1.1	Tomato	nucleus, plastid	69.04	68.55
GSMUA_Achr10P...	Banana	plasma membrane	51.96	68.22
PGSC0003DMT400068708	Potato	plasma membrane	68.68	68.2
KRH16406	Soybean	extracellular	35.59	65.36
GSMUA_Achr9P28940_001	Banana	plasma membrane	30.96	35.51
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	32.03	35.43
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	32.03	35.43
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	29.89	34.57
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	29.18	33.47
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	29.54	33.33
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	29.54	33.33
GSMUA_Achr10P...	Banana	plasma membrane	29.54	32.94
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	29.18	32.8
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	28.83	32.4
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	28.47	32.0
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	28.47	31.87
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	28.11	31.35
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	27.05	30.52
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	27.76	29.66
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	25.27	27.84
GSMUA_Achr1P13800_001	Banana	cytosol	22.42	24.8

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr1G26380_001	EnsemblPlants:GSMUA_Achr1P26380_001	EnsemblPlants:GSMUA_Achr1T26380_001	InterPro:IPR023271	UniProt:M0S395
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295C877	SEG:seg

Description

Probable aquaporin PIP2-6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26380_001]

Coordinates

chr1:-:21887614..21890184

Molecular Weight (calculated)

29670.4 Da

IEP (calculated)

9.169

GRAVY (calculated)

0.619

Length

281 amino acids

Sequence
(BLAST)

001: MTDEVRVVTE HPPAPLFDVG ELKLWSFYRA LIAEFVATLL FLYVLVATVI GHKAASLDNQ CGGVGLLGIA WAVGGMIFLL VYCTAGISGG HINPAVTFGL
101: LLGRKVSVLR AVSYMVAQCA GAICGVGIAR AIMKHQFDAF GGGTNVVALC YSNGAALGAE IIGTFVLVYT VFTATDPTRN ARDSHVPVLA PLSIGFAVFL
201: VHLATIPITG TGINPARSLG AAVIYNRRKA WNDQWIFWVG PFIGAAAAAL YHEYVLKSAA IKAFRRSTAT PEASAPRPPP P

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.