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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX71738
CDX71796
CDX84933
CDX89063
CDX89115
CDX94185
CDY03907
CDY07681
CDY10936
CDY14415
CDY15722
CDY27605
CDY41153
CDY48365
CDY48920
CDY66912
CDY66913

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G35100.1 CDX84933 AT1G27300.1 21798944
AT4G35100.1 CDY03907 AT1G27300.1 21798944
AT4G35100.1 CDY15722 AT1G27300.1 21798944
AT4G35100.1 CDY27605 AT1G27300.1 21798944
AT4G35100.1 CDY07681 AT2G39010.1 21798944
AT4G35100.1 CDY14415 AT2G39010.1 21798944
AT4G35100.1 CDX67837 AT3G60600.1 21798944
AT4G35100.1 CDX71796 AT3G60600.1 21798944
AT4G35100.1 CDX89063 AT3G60600.1 21798944
AT4G35100.1 CDY41153 AT3G60600.1 21798944
AT4G35100.1 CDY48365 AT3G60600.1 21798944
AT4G35100.1 CDX71738 AT3G61430.1 21798944
AT4G35100.1 CDX89115 AT3G61430.1 21798944
AT4G35100.1 CDY48920 AT3G61430.1 21798944
AT4G35100.1 CDY66912 AT3G61430.1 21798944
AT4G35100.1 CDY66913 AT3G61430.1 21798944
AT4G35100.1 CDX94185 AT4G23400.1 21798944
AT4G35100.1 CDY10936 AT4G23400.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17511 Canola plasma membrane 99.29 99.29
Bra034675.1-P Field mustard cytosol, peroxisome, plasma membrane 98.93 98.93
CDY52648 Canola plasma membrane 97.86 97.86
CDX69112 Canola plasma membrane 97.51 97.51
AT4G35100.1 Thale cress plasma membrane 95.37 95.71
CDX72515 Canola golgi, plasma membrane 83.63 92.52
KRH60692 Soybean mitochondrion 87.54 89.45
VIT_03s0038g02520.t01 Wine grape plasma membrane 87.54 88.17
GSMUA_Achr5P11480_001 Banana plasma membrane 61.92 87.88
Solyc01g111660.2.1 Tomato nucleus 88.26 87.63
PGSC0003DMT400015824 Potato plasma membrane 87.9 87.28
KRH51390 Soybean plasma membrane 85.77 86.69
GSMUA_Achr2P11190_001 Banana plasma membrane 83.99 83.99
GSMUA_Achr1P02360_001 Banana unclear 83.27 82.98
Os04t0233400-01 Rice plasma membrane 81.49 81.21
KRH16406 Soybean extracellular 43.77 80.39
TraesCS2D01G063900.1 Wheat plasma membrane 80.78 79.93
TraesCS2B01G077700.1 Wheat plasma membrane 80.78 79.93
TraesCS2A01G065700.1 Wheat golgi 80.78 79.93
CDY70391 Canola extracellular, golgi 44.84 79.25
CDY31523 Canola plasma membrane 71.89 77.69
CDX71032 Canola plasma membrane 71.89 77.69
CDY09192 Canola plasma membrane 71.53 77.61
CDX88767 Canola plasma membrane 71.53 77.31
CDY53629 Canola cytosol 71.17 77.22
CDY46758 Canola plasma membrane 75.8 75.27
CDY66912 Canola extracellular 55.16 75.24
CDX91340 Canola plasma membrane 76.16 75.09
CDY56697 Canola plasma membrane 76.51 74.91
CDX78177 Canola plasma membrane 76.51 74.91
CDY07519 Canola plasma membrane 75.8 74.48
CDX67611 Canola plasma membrane 75.8 74.48
CDY46759 Canola plasma membrane 75.44 74.39
GSMUA_Achr1P07460_001 Banana extracellular 46.26 74.29
CDX73446 Canola peroxisome 75.09 73.78
CDX78265 Canola plasma membrane 75.09 73.78
CDX91341 Canola plasma membrane 74.73 73.68
CDY13298 Canola plasma membrane 74.73 73.17
CDY07681 Canola plasma membrane 74.73 72.92
CDY14415 Canola cytosol, peroxisome, plasma membrane 74.73 72.92
CDX89115 Canola plasma membrane 57.65 72.0
GSMUA_Achr1P26380_001 Banana plasma membrane 71.89 71.89
CDX74983 Canola cytosol, peroxisome, plasma membrane 50.18 71.57
CDY51161 Canola cytosol, peroxisome, plasma membrane 71.89 70.63
CDY07221 Canola cytosol, peroxisome, plasma membrane 71.53 70.28
CDX74334 Canola cytosol, peroxisome, plasma membrane 71.89 70.14
CDY38017 Canola plasma membrane 71.17 69.93
CDX91911 Canola cytosol, peroxisome, plasma membrane 71.53 69.79
CDX90046 Canola cytosol, peroxisome, plasma membrane 70.82 69.58
CDX74984 Canola cytosol, peroxisome, plasma membrane 76.16 69.03
CDY10936 Canola plasma membrane 70.46 68.99
CDX94185 Canola plasma membrane 70.11 68.64
CDX83385 Canola cytosol, peroxisome, plasma membrane 69.04 67.83
CDY37078 Canola cytosol, peroxisome, plasma membrane 69.04 67.83
CDX74777 Canola cytosol, peroxisome, plasma membrane 69.04 67.83
CDY27346 Canola cytosol, peroxisome, plasma membrane 69.04 67.83
CDX71738 Canola plasma membrane 68.68 67.48
CDY18886 Canola cytosol, peroxisome, plasma membrane 68.68 67.48
CDX95670 Canola cytosol, peroxisome, plasma membrane 68.68 67.48
CDY48920 Canola plasma membrane 68.68 67.48
HORVU2Hr1G010990.2 Barley plasma membrane 70.82 62.58
CDY15165 Canola plastid 70.82 61.42
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 34.16 38.55
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 34.16 38.55
CDX97733 Canola endoplasmic reticulum, extracellular 33.81 38.31
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 33.81 38.31
CDX82410 Canola plasma membrane 33.81 38.15
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 33.1 37.2
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 33.1 37.2
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 27.76 37.14
CDY51678 Canola plasma membrane, vacuole 32.74 36.8
CDY48983 Canola plasma membrane 33.1 36.76
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 33.1 36.76
CDY28539 Canola plasma membrane 33.1 36.76
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 32.38 36.26
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 32.38 36.26
CDY66645 Canola plastid 28.47 36.2
CDY67380 Canola plastid 28.47 36.2
CDY69446 Canola cytosol 32.03 35.71
CDY07142 Canola cytosol 32.03 35.71
CDX83623 Canola golgi, plasma membrane, plastid 32.03 35.57
CDY13639 Canola plasma membrane 32.03 35.57
CDX77009 Canola cytosol, plasma membrane, vacuole 30.96 34.94
CDY53270 Canola plasma membrane 30.96 34.66
CDY35336 Canola extracellular 17.44 34.27
CDX75873 Canola extracellular, golgi, vacuole 33.45 34.18
CDY66321 Canola plasma membrane 32.03 33.83
CDY11123 Canola cytosol 31.32 33.21
CDX68239 Canola cytosol 31.32 33.21
CDY48045 Canola golgi, mitochondrion, plasma membrane 31.32 33.08
CDX96453 Canola cytosol 30.61 32.45
CDX72962 Canola plasma membrane 30.25 32.08
CDY26214 Canola plasma membrane 30.25 31.84
CDY19176 Canola plasma membrane 30.25 31.84
CDY21731 Canola golgi, mitochondrion, plasma membrane 29.89 31.46
CDX81850 Canola golgi, mitochondrion, plasma membrane 29.89 31.46
CDY66913 Canola cytosol, mitochondrion, nucleus 4.98 30.43
CDY47413 Canola mitochondrion, plastid 25.62 27.91
CDX99048 Canola mitochondrion, plastid 25.62 27.91
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078CJT3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX76314
ProteinID:CDX76314ProteinID:CDX76314.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00126685001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF196SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0001B37ED4:
Description
BnaA08g10860D
Coordinates
chrLK031807:+:304824..306476
Molecular Weight (calculated)
29808.3 Da
IEP (calculated)
9.062
GRAVY (calculated)
0.482
Length
281 amino acids
Sequence
(BLAST)
001: MSKEVSEEGH TQSHGKDYVD PPPAPFLDMG ELKSWSFYRA LIAEFIATLL FLYVTVATVI GHKKQTGPCD GVGLLGIAWA FGGMIFVLVY CTAGISGGHI
101: NPAVTFGLFL ARKVSLVRAV GYMIAQCLGA ICGVGFVKAF MKTPYNTLGG GANTVAPGYS KGTALGAEII GTFVLVYTVF SATDPKRSAR DSHIPVLAPL
201: PIGFAVFMVH LATIPITGTG INPARSFGAA VIYNHEKAWD DHWIFWVGPF VGALAAAAYH QYILRAAAVK ALASFRSSAT N
Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)
001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN
Arabidopsis Description
PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.