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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:plastid
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX84933
CDX88803
CDX92368
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25810.1 CDX84933 AT1G27300.1 21798944
AT2G25810.1 CDY03907 AT1G27300.1 21798944
AT2G25810.1 CDY15722 AT1G27300.1 21798944
AT2G25810.1 CDY27605 AT1G27300.1 21798944
AT2G25810.1 CDX70995 AT5G22290.1 21798944
AT2G25810.1 CDX88803 AT5G22290.1 21798944
AT2G25810.1 CDX92368 AT5G22290.1 21798944
AT2G25810.1 CDY09128 AT5G22290.1 21798944
AT2G25810.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015518_P001 Maize endoplasmic reticulum, extracellular 41.96 56.6
Zm00001d019676_P001 Maize endoplasmic reticulum, extracellular, plastid 41.26 55.66
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 94.41 54.22
CDX77009 Canola cytosol, plasma membrane, vacuole 93.01 53.41
Zm00001d020747_P001 Maize extracellular 39.86 53.27
AT2G25810.1 Thale cress cytosol, golgi, plasma membrane 88.81 51.0
KRH52727 Soybean cytosol 75.52 43.9
KRH62059 Soybean cytosol, plasma membrane, vacuole 74.83 43.5
PGSC0003DMT400024847 Potato extracellular, plasma membrane, vacuole 72.03 41.7
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 70.63 40.89
GSMUA_Achr10P... Banana cytosol, plasma membrane, vacuole 65.03 37.35
TraesCS3A01G434600.1 Wheat endoplasmic reticulum, extracellular, vacuole 58.04 35.02
TraesCS3D01G163400.1 Wheat endoplasmic reticulum, extracellular, vacuole 56.64 32.93
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 48.25 32.86
TraesCS3B01G182200.1 Wheat endoplasmic reticulum, extracellular, vacuole 56.64 32.27
TraesCS5A01G518300.1 Wheat golgi, plasma membrane, vacuole 57.34 32.03
TraesCS4B01G349500.1 Wheat plasma membrane 56.64 31.76
TraesCS4D01G344300.1 Wheat plasma membrane 56.64 31.76
EES02191 Sorghum cytosol 55.94 31.75
CDY66645 Canola plastid 48.95 31.67
CDY67380 Canola plastid 48.95 31.67
TraesCS3A01G155800.1 Wheat plasma membrane 54.55 31.45
TraesCS3B01G182400.1 Wheat plasma membrane 54.55 31.45
Zm00001d039713_P001 Maize plasma membrane 54.55 31.33
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 53.85 30.68
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 53.15 30.65
Zm00001d037779_P001 Maize cytosol, plasma membrane, vacuole 54.55 30.59
CDX82410 Canola plasma membrane 53.15 30.52
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 53.15 30.52
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 53.15 30.52
CDX97733 Canola endoplasmic reticulum, extracellular 52.45 30.24
VIT_04s0008g03550.t01 Wine grape plasma membrane 63.64 30.23
CDY70391 Canola extracellular, golgi 33.57 30.19
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 53.15 30.04
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 51.75 29.6
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 51.75 29.6
CDX83623 Canola golgi, plasma membrane, plastid 51.75 29.25
CDY13639 Canola plasma membrane 51.75 29.25
KXG31483 Sorghum extracellular, golgi, plasma membrane 51.75 29.25
CDX72962 Canola plasma membrane 53.15 28.68
CDX96453 Canola cytosol 53.15 28.68
GSMUA_Achr9P06260_001 Banana cytosol, golgi, plasma membrane 51.05 28.63
CDY48045 Canola golgi, mitochondrion, plasma membrane 53.15 28.57
CDY66321 Canola plasma membrane 53.15 28.57
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 51.05 28.52
CDY28539 Canola plasma membrane 50.35 28.46
CDY48983 Canola plasma membrane 50.35 28.46
GSMUA_Achr1P13800_001 Banana cytosol 50.35 28.35
CDX68239 Canola cytosol 52.45 28.3
CDY11123 Canola cytosol 52.45 28.3
CDY53270 Canola plasma membrane 49.65 28.29
Zm00001d039293_P001 Maize plastid 56.64 28.22
CDY51678 Canola plasma membrane, vacuole 48.95 28.0
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 48.95 27.89
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 48.95 27.89
CDX75873 Canola extracellular, golgi, vacuole 53.15 27.64
CDY07142 Canola cytosol 47.55 26.98
CDY69446 Canola cytosol 47.55 26.98
HORVU4Hr1G085250.2 Barley plastid 55.94 26.58
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 58.04 26.43
EES17913 Sorghum cytosol, plastid 55.94 25.48
CDX81850 Canola golgi, mitochondrion, plasma membrane 47.55 25.47
CDY21731 Canola golgi, mitochondrion, plasma membrane 47.55 25.47
CDY19176 Canola plasma membrane 46.85 25.09
CDY26214 Canola plasma membrane 46.85 25.09
HORVU3Hr1G031620.5 Barley nucleus, peroxisome, plastid 55.24 24.84
Zm00001d010410_P001 Maize plasma membrane, plastid 53.15 24.44
CDY66912 Canola extracellular 30.77 21.36
CDX89115 Canola plasma membrane 31.47 20.0
CDX99048 Canola mitochondrion, plastid 33.57 18.6
CDY09192 Canola plasma membrane 33.57 18.53
CDX71032 Canola plasma membrane 33.57 18.46
CDX88767 Canola plasma membrane 33.57 18.46
CDY31523 Canola plasma membrane 33.57 18.46
CDY47413 Canola mitochondrion, plastid 32.87 18.22
CDX72515 Canola golgi, plasma membrane 31.47 17.72
CDY46758 Canola plasma membrane 34.97 17.67
CDX91340 Canola plasma membrane 34.97 17.54
CDX91341 Canola plasma membrane 34.97 17.54
CDY46759 Canola plasma membrane 34.97 17.54
CDX69112 Canola plasma membrane 34.27 17.44
CDX76314 Canola cytosol 34.27 17.44
CDY17511 Canola plasma membrane 34.27 17.44
CDY52648 Canola plasma membrane 34.27 17.44
CDY53629 Canola cytosol 31.47 17.37
CDX67611 Canola plasma membrane 34.27 17.13
CDY07519 Canola plasma membrane 34.27 17.13
CDX78177 Canola plasma membrane 34.27 17.07
CDY56697 Canola plasma membrane 34.27 17.07
CDX90046 Canola cytosol, peroxisome, plasma membrane 33.57 16.78
CDX71738 Canola plasma membrane 32.87 16.43
CDX73446 Canola peroxisome 32.87 16.43
CDX74777 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDX78265 Canola plasma membrane 32.87 16.43
CDX83385 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDY18886 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDY27346 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDY37078 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDY38017 Canola plasma membrane 32.87 16.43
CDY48920 Canola plasma membrane 32.87 16.43
CDY51161 Canola cytosol, peroxisome, plasma membrane 32.87 16.43
CDY13298 Canola plasma membrane 32.87 16.38
CDX74334 Canola cytosol, peroxisome, plasma membrane 32.87 16.32
CDX91911 Canola cytosol, peroxisome, plasma membrane 32.87 16.32
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.97 16.13
CDY07221 Canola cytosol, peroxisome, plasma membrane 32.17 16.08
CDX94185 Canola plasma membrane 31.47 15.68
CDY07681 Canola plasma membrane 31.47 15.62
CDY14415 Canola cytosol, peroxisome, plasma membrane 31.47 15.62
CDY10936 Canola plasma membrane 30.77 15.33
CDY15165 Canola plastid 32.87 14.51
HORVU3Hr1G031680.1 Barley vacuole 18.18 9.7
CDX74983 Canola cytosol, peroxisome, plasma membrane 12.59 9.14
CDY66913 Canola cytosol, mitochondrion, nucleus 0.7 2.17
Protein Annotations
Gene3D:1.20.1080.10MapMan:35.1GO:A0A078HC46UniProt:A0A078HC46InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY35336ProteinID:CDY35336ProteinID:CDY35336.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00058306001InterPro:IPR023271InterPro:MIPPFAM:PF00230PRINTS:PR00783PANTHER:PTHR19139
PANTHER:PTHR19139:SF186SUPFAM:SSF81338SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EF2137:
Description
BnaA04g15110DBnaA04g15110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC46]
Coordinates
chrLK032350:-:160458..164712
Molecular Weight (calculated)
15097.2 Da
IEP (calculated)
4.175
GRAVY (calculated)
0.443
Length
143 amino acids
Sequence
(BLAST)
001: MSSNPPNIWA LLLSTLGTPV HTLASGISYT QGIIWEIILT FSLLFTVYAT MVDPKKGSLD GLGPLLTGFV VGANILAGGA FSGASMNPAR SFGPALVSGN
101: WTDHWVYWVG PLIGGGLAGF IYENVLIDRS DAPLADDEQP FLN
Best Arabidopsis Sequence Match ( AT2G25810.1 )
(BLAST)
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.