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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78177
CDY13298
CDY56697

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G53420.1 CDX78177 AT3G53420.1 19258017
AT3G53420.1 CDY13298 AT3G53420.1 19258017
AT3G53420.1 CDY56697 AT3G53420.1 19258017
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006997.1-P Field mustard plasma membrane 99.65 99.65
CDX78177 Canola plasma membrane 99.65 99.65
CDY70391 Canola extracellular, golgi 54.36 98.11
CDY13298 Canola plasma membrane 97.21 97.21
AT3G53420.1 Thale cress plasma membrane 93.73 93.73
CDY46759 Canola plasma membrane 91.64 92.28
CDX91341 Canola plasma membrane 91.29 91.93
CDY46758 Canola plasma membrane 90.59 91.87
CDX91340 Canola plasma membrane 90.94 91.58
CDX74983 Canola cytosol, peroxisome, plasma membrane 60.98 88.83
CDX74984 Canola cytosol, peroxisome, plasma membrane 90.94 84.19
CDX71032 Canola plasma membrane 75.26 83.08
CDY09192 Canola plasma membrane 74.91 83.01
CDX88767 Canola plasma membrane 74.91 82.69
PGSC0003DMT400027154 Potato plasma membrane 80.49 82.21
Solyc10g084120.1.1 Tomato nucleus 80.49 82.21
CDY31523 Canola plasma membrane 74.22 81.92
CDY53629 Canola cytosol 73.17 81.08
Os07t0448800-01 Rice plasma membrane 81.88 81.03
EER98451 Sorghum plasma membrane 81.53 80.69
TraesCS2A01G198500.1 Wheat plasma membrane 81.18 80.34
Zm00001d019563_P006 Maize plasma membrane 80.84 80.0
TraesCS2B01G225900.1 Wheat golgi 80.84 80.0
TraesCS2D01G206300.1 Wheat golgi 80.84 80.0
CDX67611 Canola plasma membrane 78.4 78.67
CDX78265 Canola plasma membrane 78.4 78.67
CDY07519 Canola plasma membrane 78.4 78.67
CDX73446 Canola peroxisome 78.05 78.32
Zm00001d005421_P001 Maize plasma membrane 79.09 77.74
CDX69112 Canola plasma membrane 75.96 77.58
CDY52648 Canola plasma membrane 75.96 77.58
CDX72515 Canola golgi, plasma membrane 68.64 77.56
CDX76314 Canola cytosol 74.91 76.51
CDY17511 Canola plasma membrane 74.56 76.16
CDY07681 Canola plasma membrane 75.96 75.69
CDY14415 Canola cytosol, peroxisome, plasma membrane 75.61 75.35
CDY66912 Canola extracellular 53.66 74.76
CDX89115 Canola plasma membrane 55.75 71.11
CDY51161 Canola cytosol, peroxisome, plasma membrane 68.29 68.53
CDX90046 Canola cytosol, peroxisome, plasma membrane 68.29 68.53
HORVU2Hr1G038740.1 Barley golgi, mitochondrion, plasma membrane 81.18 68.33
CDY07221 Canola cytosol, peroxisome, plasma membrane 67.94 68.18
CDY38017 Canola plasma membrane 67.94 68.18
CDX74334 Canola cytosol, peroxisome, plasma membrane 68.29 68.06
CDY27346 Canola cytosol, peroxisome, plasma membrane 67.6 67.83
CDY37078 Canola cytosol, peroxisome, plasma membrane 67.6 67.83
CDX74777 Canola cytosol, peroxisome, plasma membrane 67.6 67.83
CDY18886 Canola cytosol, peroxisome, plasma membrane 67.6 67.83
CDX83385 Canola cytosol, peroxisome, plasma membrane 67.6 67.83
CDX91911 Canola cytosol, peroxisome, plasma membrane 67.94 67.71
CDY48920 Canola plasma membrane 67.25 67.48
CDX95670 Canola cytosol, peroxisome, plasma membrane 67.25 67.48
CDX71738 Canola plasma membrane 67.25 67.48
CDY10936 Canola plasma membrane 67.25 67.25
CDX94185 Canola plasma membrane 66.9 66.9
CDY15165 Canola plastid 68.64 60.8
CDX97733 Canola endoplasmic reticulum, extracellular 33.8 39.11
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 33.8 39.11
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 33.45 38.55
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 33.45 38.55
CDX82410 Canola plasma membrane 33.1 38.15
CDY69446 Canola cytosol 32.4 36.9
CDY07142 Canola cytosol 32.4 36.9
CDY28539 Canola plasma membrane 32.4 36.76
CDY48983 Canola plasma membrane 32.4 36.76
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 26.83 36.67
CDX83623 Canola golgi, plasma membrane, plastid 32.06 36.36
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 32.06 36.36
CDY13639 Canola plasma membrane 32.06 36.36
CDY51678 Canola plasma membrane, vacuole 31.36 36.0
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 31.36 36.0
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 31.36 36.0
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 31.36 35.86
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 31.36 35.86
CDY67380 Canola plastid 27.53 35.75
CDY66645 Canola plastid 27.53 35.75
CDY66321 Canola plasma membrane 33.1 35.71
CDX77009 Canola cytosol, plasma membrane, vacuole 30.66 35.34
CDY48045 Canola golgi, mitochondrion, plasma membrane 32.4 34.96
CDY53270 Canola plasma membrane 30.31 34.66
CDX75873 Canola extracellular, golgi, vacuole 33.1 34.55
CDX96453 Canola cytosol 31.71 34.34
CDY35336 Canola extracellular 17.07 34.27
CDX72962 Canola plasma membrane 31.36 33.96
CDY11123 Canola cytosol 31.36 33.96
CDX68239 Canola cytosol 31.36 33.96
CDY26214 Canola plasma membrane 31.01 33.33
CDY19176 Canola plasma membrane 31.01 33.33
CDY66913 Canola cytosol, mitochondrion, nucleus 5.23 32.61
CDY21731 Canola golgi, mitochondrion, plasma membrane 30.31 32.58
CDX81850 Canola golgi, mitochondrion, plasma membrane 29.97 32.21
CDX99048 Canola mitochondrion, plastid 26.13 29.07
CDY47413 Canola mitochondrion, plastid 25.78 28.68
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078J2Z4UniProt:A0A078J2Z4InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY56697ProteinID:CDY56697ProteinID:CDY56697.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00019931001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF260SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0001B34C3ASEG:seg::::
Description
BnaCnng31040DBnaCnng31040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2Z4]
Coordinates
chrLK033512:-:32987..34993
Molecular Weight (calculated)
30463.9 Da
IEP (calculated)
7.494
GRAVY (calculated)
0.553
Length
287 amino acids
Sequence
(BLAST)
001: MAKDVEAVSG EGFQTRDYQD PPPAPLFDPE ELTKWSFYRA VIAEFVATLL FLYITVLTVI GYKIQTDSTA GGVDCGGVGI LGIAWAFGGM IFILVYCTAG
101: ISGGHINPAV TFGLLLARKV SLVRAILYMV AQCLGAICGV GFVKAFQSSY YVRYGGGANS LADGYSTGTG LAAEIIGTFV LVYTVFSATD PKRSARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIFN ESKPWDDHWI FWVGPFVGAA IAAFYHQFVL RASGSKSLGS FRSAANV
Best Arabidopsis Sequence Match ( AT3G53420.2 )
(BLAST)
001: MAKDVEAVPG EGFQTRDYQD PPPAPFIDGA ELKKWSFYRA VIAEFVATLL FLYITVLTVI GYKIQSDTDA GGVDCGGVGI LGIAWAFGGM IFILVYCTAG
101: ISGGHINPAV TFGLFLARKV SLPRALLYII AQCLGAICGV GFVKAFQSSY YTRYGGGANS LADGYSTGTG LAAEIIGTFV LVYTVFSATD PKRSARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN KSKPWDDHWI FWVGPFIGAA IAAFYHQFVL RASGSKSLGS FRSAANV
Arabidopsis Description
PIP2-1PIP2A [Source:UniProtKB/TrEMBL;Acc:A0A178V8P4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.