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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:
  • plastid 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, plastid
Any Predictor:golgi, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX72962
CDX75873
CDX78177
CDX82410
CDX83623
CDX96453
CDY11123
CDY13298
CDY13639
CDY28539
CDY48045
CDY48983
CDY56697
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26520.1 CDX68239 AT1G73190.1 23163742
AT3G26520.1 CDX72962 AT1G73190.1 23163742
AT3G26520.1 CDX96453 AT1G73190.1 23163742
AT3G26520.1 CDY11123 AT1G73190.1 23163742
AT3G26520.1 CDY48045 AT1G73190.1 23163742
AT3G26520.1 CDY66321 AT1G73190.1 23163742
AT3G26520.1 CDX75873 AT3G16240.1 23163742
AT3G26520.1 CDX82410 AT3G16240.1 23163742
AT3G26520.1 CDX83623 AT3G26520.1 23163742
AT3G26520.1 CDY13639 AT3G26520.1 23163742
AT3G26520.1 CDY28539 AT3G26520.1 23163742
AT3G26520.1 CDY48983 AT3G26520.1 23163742
AT3G26520.1 CDX78177 AT3G53420.1 23163742
AT3G26520.1 CDY13298 AT3G53420.1 23163742
AT3G26520.1 CDY56697 AT3G53420.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13639 Canola plasma membrane 99.6 99.6
Bra025210.1-P Field mustard plasma membrane 99.21 99.21
CDY28539 Canola plasma membrane 92.89 92.89
CDY48983 Canola plasma membrane 92.89 92.89
CDY67380 Canola plastid 80.24 91.86
CDY66645 Canola plastid 80.24 91.86
AT3G26520.1 Thale cress plasma membrane 90.51 90.51
CDY53270 Canola plasma membrane 88.14 88.84
PGSC0003DMT400072432 Potato cytosol 81.82 83.47
Solyc10g083880.1.1 Tomato plastid 81.03 82.66
KRH67767 Soybean mitochondrion 81.42 82.4
VIT_08s0007g04780.t01 Wine grape cytosol 81.42 82.07
KRG96046 Soybean nucleus 80.24 81.2
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 79.05 80.0
Os03t0146100-01 Rice nucleus 78.66 79.6
EER92857 Sorghum cytosol 78.26 79.2
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 76.68 77.6
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 76.68 77.6
Zm00001d027652_P001 Maize plasma membrane 75.89 76.8
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 74.7 75.6
TraesCS4B01G310900.1 Wheat unclear 74.7 75.6
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 74.7 75.3
HORVU4Hr1G079230.1 Barley vacuole 73.91 74.8
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 71.54 72.11
CDY69446 Canola cytosol 71.54 71.83
CDY07142 Canola cytosol 71.54 71.83
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 71.54 70.43
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 65.22 66.0
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 64.82 65.6
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 54.15 65.24
CDY51678 Canola plasma membrane, vacuole 64.03 64.8
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 63.24 63.74
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 63.24 63.74
CDX82410 Canola plasma membrane 62.45 63.45
CDX97733 Canola endoplasmic reticulum, extracellular 61.66 62.9
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 61.66 62.65
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 61.66 62.65
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 60.87 62.1
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 60.08 60.08
CDX75873 Canola extracellular, golgi, vacuole 62.45 57.45
CDY48045 Canola golgi, mitochondrion, plasma membrane 59.68 56.77
CDY66321 Canola plasma membrane 59.29 56.39
CDX72962 Canola plasma membrane 58.89 56.23
CDX96453 Canola cytosol 58.5 55.85
CDX68239 Canola cytosol 58.1 55.47
CDY11123 Canola cytosol 58.1 55.47
CDX81850 Canola golgi, mitochondrion, plasma membrane 56.92 53.93
CDY21731 Canola golgi, mitochondrion, plasma membrane 56.52 53.56
CDY26214 Canola plasma membrane 55.73 52.81
CDX77009 Canola cytosol, plasma membrane, vacuole 51.78 52.61
CDY19176 Canola plasma membrane 55.34 52.43
CDY35336 Canola extracellular 29.25 51.75
CDY47413 Canola mitochondrion, plastid 39.13 38.37
CDX99048 Canola mitochondrion, plastid 38.74 37.98
CDX72515 Canola golgi, plasma membrane 33.2 33.07
CDY66912 Canola extracellular 26.88 33.01
CDY09192 Canola plasma membrane 33.6 32.82
CDY31523 Canola plasma membrane 33.2 32.31
CDX71032 Canola plasma membrane 33.2 32.31
CDX88767 Canola plasma membrane 33.2 32.31
CDY70391 Canola extracellular, golgi 20.16 32.08
CDX78177 Canola plasma membrane 36.36 32.06
CDY56697 Canola plasma membrane 36.36 32.06
CDX76314 Canola cytosol 35.57 32.03
CDY52648 Canola plasma membrane 35.57 32.03
CDX69112 Canola plasma membrane 35.57 32.03
CDY17511 Canola plasma membrane 35.18 31.67
CDY07681 Canola plasma membrane 35.97 31.6
CDY14415 Canola cytosol, peroxisome, plasma membrane 35.97 31.6
CDX89115 Canola plasma membrane 28.06 31.56
CDX73446 Canola peroxisome 35.57 31.47
CDX78265 Canola plasma membrane 35.57 31.47
CDY53629 Canola cytosol 32.02 31.27
CDY46759 Canola plasma membrane 35.18 31.23
CDX67611 Canola plasma membrane 35.18 31.12
CDY07519 Canola plasma membrane 35.18 31.12
CDY46758 Canola plasma membrane 34.78 31.1
CDY13298 Canola plasma membrane 35.18 31.01
CDX91340 Canola plasma membrane 34.78 30.88
CDX91341 Canola plasma membrane 34.78 30.88
CDX74983 Canola cytosol, peroxisome, plasma membrane 23.32 29.95
CDX90046 Canola cytosol, peroxisome, plasma membrane 33.6 29.72
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.2 29.37
CDX91911 Canola cytosol, peroxisome, plasma membrane 33.2 29.17
CDY51161 Canola cytosol, peroxisome, plasma membrane 32.81 29.02
CDY10936 Canola plasma membrane 32.81 28.92
CDX74334 Canola cytosol, peroxisome, plasma membrane 32.81 28.82
CDY38017 Canola plasma membrane 32.41 28.67
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.78 28.39
CDY48920 Canola plasma membrane 32.02 28.32
CDX83385 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDX71738 Canola plasma membrane 32.02 28.32
CDY18886 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDX74777 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDY27346 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDY37078 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDX94185 Canola plasma membrane 32.02 28.22
CDX95670 Canola cytosol, peroxisome, plasma membrane 31.62 27.97
CDY15165 Canola plastid 32.81 25.62
CDY66913 Canola cytosol, mitochondrion, nucleus 1.19 6.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078D8J2InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX83623
ProteinID:CDX83623ProteinID:CDX83623.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00139294001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelixUniParc:UPI0004EAD11CSEG:seg:
Description
BnaC07g23630D
Coordinates
chrLK031833:-:1140307..1141803
Molecular Weight (calculated)
25762.3 Da
IEP (calculated)
6.336
GRAVY (calculated)
0.828
Length
253 amino acids
Sequence
(BLAST)
001: MPIRNIAIGG VQGEVTHPSA LRAALAEFIS TLIFVFAGSG SGIAFNKLTD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGAFVGGNIT
101: LLRGILYWIA QLLGSVVACL LLKFATGGLA VPAFGLSAGV ESLNGFVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWIY WAGPLVGGGL AGLIYEFVFI NQNGHEQLPT TDY
Best Arabidopsis Sequence Match ( AT3G26520.1 )
(BLAST)
001: MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT
101: LLRGILYWIA QLLGSVAACF LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI DENAHEQLPT TDY
Arabidopsis Description
TIP1-2Aquaporin TIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q41963]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.