Factsheet for Bra025210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
vacuole 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001626.1-P
Bra006997.1-P
Bra008079.1-P
Bra016014.1-P
Bra025210.1-P
Bra032937.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26520.1	Bra008079.1-P	AT1G73190.1	23163742
AT3G26520.1	Bra016014.1-P	AT1G73190.1	23163742
AT3G26520.1	Bra001626.1-P	AT3G16240.1	23163742
AT3G26520.1	Bra025210.1-P	AT3G26520.1	23163742
AT3G26520.1	Bra032937.1-P	AT3G26520.1	23163742
AT3G26520.1	Bra006997.1-P	AT3G53420.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13639	Canola	plasma membrane	99.6	99.6
CDX83623	Canola	golgi, plasma membrane, plastid	99.21	99.21
Bra032937.1-P	Field mustard	plasma membrane	92.89	92.89
AT3G26520.1	Thale cress	plasma membrane	90.51	90.51
Bra017222.1-P	Field mustard	cytosol	88.54	89.24
PGSC0003DMT400072432	Potato	cytosol	81.82	83.47
Solyc10g083880.1.1	Tomato	plastid	81.03	82.66
KRH67767	Soybean	mitochondrion	81.42	82.4
VIT_08s0007g04780.t01	Wine grape	cytosol	81.42	82.07
KRG96046	Soybean	nucleus	80.24	81.2
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	79.05	80.0
Os03t0146100-01	Rice	nucleus	78.26	79.2
EER92857	Sorghum	cytosol	77.87	78.8
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	76.68	77.6
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	76.28	77.2
Zm00001d027652_P001	Maize	plasma membrane	75.49	76.4
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	74.7	75.3
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	74.31	75.2
TraesCS4B01G310900.1	Wheat	unclear	74.31	75.2
HORVU4Hr1G079230.1	Barley	vacuole	73.52	74.4
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	71.15	71.71
Bra037415.1-P	Field mustard	cytosol	70.75	71.03
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	71.15	70.04
Bra022131.1-P	Field mustard	extracellular	54.15	67.16
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	64.43	65.2
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	62.06	63.05
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	62.06	62.55
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	61.26	62.5
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.78	62.38
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	59.29	56.39
Bra016014.1-P	Field mustard	cytosol	58.89	56.23
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	56.13	53.18
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	55.73	52.81
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	50.99	51.81
Bra018148.1-P	Field mustard	extracellular, plasma membrane, plastid	38.74	38.43
Bra005216.1-P	Field mustard	cytosol, golgi, plasma membrane	30.83	33.77
Bra020238.1-P	Field mustard	plasma membrane	36.76	32.86
Bra006650.1-P	Field mustard	plasma membrane	36.36	32.28
Bra006997.1-P	Field mustard	plasma membrane	36.36	32.06
Bra017697.1-P	Field mustard	cytosol	35.57	32.03
Bra011585.1-P	Field mustard	plasma membrane	35.57	32.03
Bra002462.1-P	Field mustard	cytosol	32.81	31.92
Bra000111.1-P	Field mustard	plasma membrane	35.97	31.6
Bra023103.1-P	Field mustard	plasma membrane	35.57	31.58
Bra007100.1-P	Field mustard	plasma membrane	35.57	31.47
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.78	31.32
Bra023102.1-P	Field mustard	plasma membrane	34.78	31.1
Bra003196.1-P	Field mustard	plasma membrane	34.78	30.77
Bra005215.1-P	Field mustard	cytosol, peroxisome, plasma membrane	27.67	29.41
Bra033248.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.2	29.37
Bra032644.1-P	Field mustard	plasma membrane	33.2	29.37
Bra019307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.81	28.92
Bra000974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.81	28.82
Bra014437.1-P	Field mustard	plasma membrane	32.02	28.32
Bra007603.1-P	Field mustard	plasma membrane	31.62	27.97
Bra004950.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.62	27.97
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.06	25.36

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra025210	EnsemblPlants:Bra025210.1
EnsemblPlants:Bra025210.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M4E8V4
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI000253F695	SEG:seg	:

Description

AT3G26520 (E=2e-123) TIP2, SITIP, GAMMA-TIP2, TIP1;2 | TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel

Coordinates

chrA06:+:22747473..22748551

Molecular Weight (calculated)

25774.3 Da

IEP (calculated)

5.960

GRAVY (calculated)

0.802

Length

253 amino acids

Sequence
(BLAST)

001: MPIRNIAIGG VQEEVTHPSA LRAALAEFIS TLIFVFAGSG SGIAFNKLTD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGAFVGGNIT
101: LLRGILYWIA QLLGSVVACL LLKFATGGLA VPAFGLSAGV ESLNGFVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGASSGASMN
201: PAVAFGPAVV SWTWTNHWIY WAGPLVGGGL AGLIYEFVFI NQNGHEQLPT TDY

Best Arabidopsis Sequence Match ( AT3G26520.1 )
(BLAST)

001: MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT
101: LLRGILYWIA QLLGSVAACF LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI DENAHEQLPT TDY

Arabidopsis Description

TIP1-2Aquaporin TIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q41963]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.