Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96046 | Soybean | nucleus | 96.8 | 96.8 |
| CDY66645 | Canola | plastid | 74.0 | 83.71 |
| CDY67380 | Canola | plastid | 74.0 | 83.71 |
| Bra017222.1-P | Field mustard | cytosol | 83.6 | 83.27 |
| AT2G36830.1 | Thale cress | golgi, plasma membrane, vacuole | 83.2 | 82.87 |
| VIT_08s0007g04780.t01 | Wine grape | cytosol | 83.2 | 82.87 |
| CDY53270 | Canola | plasma membrane | 82.4 | 82.07 |
| PGSC0003DMT400072432 | Potato | cytosol | 81.2 | 81.85 |
| CDY13639 | Canola | plasma membrane | 82.8 | 81.82 |
| Bra025210.1-P | Field mustard | plasma membrane | 82.4 | 81.42 |
| CDX83623 | Canola | golgi, plasma membrane, plastid | 82.4 | 81.42 |
| Solyc10g083880.1.1 | Tomato | plastid | 80.4 | 81.05 |
| GSMUA_Achr8P12920_001 | Banana | cytosol, plasma membrane, vacuole | 79.6 | 79.6 |
| AT3G26520.1 | Thale cress | plasma membrane | 80.0 | 79.05 |
| CDY48983 | Canola | plasma membrane | 79.2 | 78.26 |
| CDY28539 | Canola | plasma membrane | 79.2 | 78.26 |
| Bra032937.1-P | Field mustard | plasma membrane | 79.2 | 78.26 |
| Os03t0146100-01 | Rice | nucleus | 77.6 | 77.6 |
| GSMUA_Achr1P01270_001 | Banana | cytosol, plasma membrane, vacuole | 77.2 | 77.2 |
| KRH24847 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 75.6 | 77.14 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 76.8 | 76.8 |
| KRH29856 | Soybean | cytosol, plasma membrane, vacuole | 76.8 | 76.19 |
| KRH23017 | Soybean | cytosol, plasma membrane, vacuole | 76.4 | 75.79 |
| Zm00001d027652_P001 | Maize | plasma membrane | 75.6 | 75.6 |
| TraesCS4B01G310900.1 | Wheat | unclear | 75.2 | 75.2 |
| TraesCS4A01G410800.1 | Wheat | golgi, plasma membrane, vacuole | 75.2 | 75.2 |
| GSMUA_Achr5P19470_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 75.2 | 74.9 |
| EER92857 | Sorghum | cytosol | 74.4 | 74.4 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 74.4 | 74.4 |
| KRH10300 | Soybean | endoplasmic reticulum, extracellular | 47.2 | 73.75 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 72.0 | 71.71 |
| KRH70511 | Soybean | cytosol | 71.2 | 70.63 |
| TraesCS4D01G308800.1 | Wheat | golgi, plasma membrane, vacuole | 72.4 | 70.43 |
| KRH01591 | Soybean | cytosol | 70.0 | 69.44 |
| KRH36204 | Soybean | cytosol, extracellular, mitochondrion, plasma membrane | 66.4 | 65.87 |
| KRG93712 | Soybean | plasma membrane, vacuole | 61.6 | 64.98 |
| KRH09912 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 64.0 | 64.78 |
| KRH19959 | Soybean | mitochondrion | 64.4 | 64.4 |
| KRH44312 | Soybean | extracellular | 63.6 | 64.11 |
| KRH23420 | Soybean | plasma membrane, vacuole | 63.2 | 63.97 |
| KRH47241 | Soybean | mitochondrion | 63.2 | 63.71 |
| KRH77347 | Soybean | mitochondrion | 62.4 | 62.65 |
| KRH28112 | Soybean | mitochondrion | 62.4 | 62.65 |
| KRG90553 | Soybean | extracellular | 60.0 | 61.73 |
| KRH38823 | Soybean | nucleus | 58.0 | 56.86 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 57.2 | 56.08 |
| KRH34280 | Soybean | endoplasmic reticulum | 55.6 | 54.72 |
| KRG92517 | Soybean | cytosol | 54.8 | 53.94 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 50.0 | 50.81 |
| KRH52727 | Soybean | cytosol | 49.6 | 50.41 |
| KRH23943 | Soybean | plasma membrane | 30.0 | 40.98 |
| KRH39857 | Soybean | plastid | 38.8 | 38.49 |
| KRH60692 | Soybean | mitochondrion | 36.0 | 32.73 |
| KRH16406 | Soybean | extracellular | 20.0 | 32.68 |
| KRG91899 | Soybean | plasma membrane | 36.8 | 32.39 |
| KRH70183 | Soybean | mitochondrion | 36.4 | 31.93 |
| KRH51390 | Soybean | plasma membrane | 35.2 | 31.65 |
| KRH08522 | Soybean | plasma membrane | 36.0 | 31.58 |
| KRH08523 | Soybean | plasma membrane | 36.0 | 31.58 |
| KRH22889 | Soybean | golgi, peroxisome, plasma membrane | 36.0 | 31.36 |
| KRH26410 | Soybean | golgi, peroxisome, plasma membrane | 36.0 | 31.36 |
| KRH70184 | Soybean | plasma membrane | 35.6 | 31.23 |
| KRH34875 | Soybean | plasma membrane | 36.4 | 30.74 |
| KRH25011 | Soybean | mitochondrion | 34.8 | 30.42 |
| KRH29919 | Soybean | mitochondrion | 34.8 | 30.42 |
| KRG95980 | Soybean | plasma membrane | 34.4 | 30.18 |
| KRH67688 | Soybean | plasma membrane | 34.4 | 30.07 |
| KRG97766 | Soybean | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 16.0 | 29.85 |
| KRH00178 | Soybean | golgi, peroxisome, plasma membrane | 33.6 | 29.27 |
| KRH66037 | Soybean | golgi, peroxisome, plasma membrane | 32.0 | 28.17 |
| KRH14983 | Soybean | mitochondrion | 32.4 | 28.03 |
| KRH27918 | Soybean | plasma membrane | 32.0 | 27.97 |
| KRH31119 | Soybean | endoplasmic reticulum | 32.0 | 27.68 |
| KRH77555 | Soybean | plasma membrane | 31.6 | 27.62 |
| KRH59918 | Soybean | peroxisome | 31.2 | 27.18 |
| KRH41192 | Soybean | endoplasmic reticulum | 31.2 | 26.99 |
| KRH73156 | Soybean | golgi, peroxisome, plasma membrane | 32.4 | 25.39 |
| KRH75838 | Soybean | golgi, peroxisome, plasma membrane | 31.6 | 21.76 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | UniProt:A0A0R4J307 | EMBL:ACUP02002080 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| EnsemblPlantsGene:GLYMA_03G185900 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0015793 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| InterPro:IPR023271 | EnsemblPlants:KRH67767 | ProteinID:KRH67767 | ProteinID:KRH67767.1 | InterPro:MIP | InterPro:MIP_CS |
| PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF265 | SUPFAM:SSF81338 |
| TMHMM:TMhelix | UniParc:UPI0001B63AF5 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:39767354..39768200
Molecular Weight (calculated)
25449.1 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.864
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIRNIAIGR PEEATHPDTL KAGLAEFIST LIFVFAGSGS GIAYNKLTDN GAATPAGLIS ASIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGIVYVIAQ LLGSIVASLL LAFVTASPVP AFGLSAGVGV GNALVLEIVM TFGLVYTVYA TAVDPKKGNL GIIAPIAIGF IVGANILLGG AFSGAAMNPA
201: VTFGPAVVSW TWTNHWIYWA GPLIGGGIAG LIYEVVFISH THEQLPSTDY
101: LRGIVYVIAQ LLGSIVASLL LAFVTASPVP AFGLSAGVGV GNALVLEIVM TFGLVYTVYA TAVDPKKGNL GIIAPIAIGF IVGANILLGG AFSGAAMNPA
201: VTFGPAVVSW TWTNHWIYWA GPLIGGGIAG LIYEVVFISH THEQLPSTDY
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.