Factsheet for PGSC0003DMT400072432

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006558
PGSC0003DMT400027154
PGSC0003DMT400039507
PGSC0003DMT400069330
PGSC0003DMT400072432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	PGSC0003DMT400039507	AT1G73190.1	21798944
AT2G36830.1	PGSC0003DMT400069330	AT1G73190.1	21798944
AT3G26520.1	PGSC0003DMT400039507	AT1G73190.1	23163742
AT3G26520.1	PGSC0003DMT400069330	AT1G73190.1	23163742
AT3G26520.1	PGSC0003DMT400006558	AT3G16240.1	23163742
AT3G26520.1	PGSC0003DMT400072432	AT3G26520.1	23163742
AT3G26520.1	PGSC0003DMT400027154	AT3G53420.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083880.1.1	Tomato	plastid	97.98	97.98
CDY66645	Canola	plastid	75.81	85.07
CDY67380	Canola	plastid	75.81	85.07
Bra017222.1-P	Field mustard	cytosol	85.08	84.06
CDY53270	Canola	plasma membrane	85.08	84.06
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	84.27	83.27
CDY13639	Canola	plasma membrane	83.87	82.21
Bra025210.1-P	Field mustard	plasma membrane	83.47	81.82
CDX83623	Canola	golgi, plasma membrane, plastid	83.47	81.82
VIT_08s0007g04780.t01	Wine grape	cytosol	82.26	81.27
KRH67767	Soybean	mitochondrion	81.85	81.2
KRG96046	Soybean	nucleus	80.24	79.6
AT3G26520.1	Thale cress	plasma membrane	81.05	79.45
Bra032937.1-P	Field mustard	plasma membrane	80.24	78.66
CDY28539	Canola	plasma membrane	80.24	78.66
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	80.24	78.66
CDY48983	Canola	plasma membrane	80.24	78.66
PGSC0003DMT400018375	Potato	cytosol	79.03	78.4
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	76.21	75.3
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	63.71	63.45
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	62.1	61.6
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	61.29	61.29
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	61.29	61.04
PGSC0003DMT400069330	Potato	cytosol	60.89	58.3
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	60.08	57.31
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	53.63	53.85
PGSC0003DMT400038394	Potato	plastid	46.77	46.22
PGSC0003DMT400053882	Potato	extracellular	31.45	39.8
PGSC0003DMT400053877	Potato	plasma membrane	38.31	34.05
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	33.87	33.47
PGSC0003DMT400027154	Potato	plasma membrane	36.29	32.03
PGSC0003DMT400015824	Potato	plasma membrane	36.29	31.8
PGSC0003DMT400020870	Potato	plasma membrane	36.69	31.71
PGSC0003DMT400068708	Potato	plasma membrane	35.89	31.45
PGSC0003DMT400062174	Potato	plasma membrane	35.48	30.77
PGSC0003DMT400053881	Potato	plasma membrane	37.9	30.62
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	34.68	30.18
PGSC0003DMT400053479	Potato	plasma membrane	33.87	29.37
PGSC0003DMT400060322	Potato	mitochondrion	32.26	29.09
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	33.06	28.47
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	32.66	28.32
PGSC0003DMT400014809	Potato	peroxisome	32.26	27.87
PGSC0003DMT400064008	Potato	extracellular	11.29	25.0

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102589703	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1CQA6	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400028182	PGSC:PGSC0003DMG400028182	EnsemblPlants:PGSC0003DMT400072432	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295D63A
RefSeq:XP_006339093.1	SEG:seg	:	:	:	:

Description

Aquaporin TIP1;3 [Source:PGSC_GENE;Acc:PGSC0003DMG400028182]

Coordinates

chr10:-:55272336..55274167

Molecular Weight (calculated)

25343.0 Da

IEP (calculated)

6.339

GRAVY (calculated)

0.819

Length

248 amino acids

Sequence
(BLAST)

001: MPISRIAIGR TEEATHPDAL KAALAEFIST LIFVFAGSGS GVAFSKLTGG GANTPTGLIA AAIAHAFGLF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSVVACLL LKFTTGGMEI GAFSLSDGVG VGNALVLEIV MTFGLVYTVY ATAVDPKKGS LGTIAPIAIG FIVGANILVG GAFDGASMNP
201: AVSFGPAVVS WTWNNHWVYW VGPLIGGGLA GLIYEFFFIN QTHEPLPQ

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.