Factsheet for PGSC0003DMT400038394

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
plasma membrane 3
vacuole 2
extracellular 1
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plasma membrane, vacuole
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093230.2.1	Tomato	plastid	99.2	99.2
VIT_16s0022g00330.t01	Wine grape	cytosol, extracellular, plasma membrane, plastid	68.92	69.48
KRH39857	Soybean	plastid	61.35	61.11
KRH23943	Soybean	plasma membrane	42.23	57.92
AT3G47440.1	Thale cress	mitochondrion, plastid	58.96	57.81
Bra018148.1-P	Field mustard	extracellular, plasma membrane, plastid	57.37	56.47
CDY47413	Canola	mitochondrion, plastid	57.77	56.2
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	58.57	55.89
CDX99048	Canola	mitochondrion, plastid	57.37	55.81
TraesCS2D01G411500.1	Wheat	endoplasmic reticulum	57.77	55.34
TraesCS2B01G433300.1	Wheat	endoplasmic reticulum	54.58	55.24
TraesCS2A01G414200.1	Wheat	plastid	56.97	54.58
OQU82093	Sorghum	plasma membrane	54.58	51.31
Os04t0550800-01	Rice	endoplasmic reticulum, plasma membrane	54.18	50.56
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	49.4	49.6
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	47.01	47.58
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	47.01	47.39
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	47.01	47.39
PGSC0003DMT400072432	Potato	cytosol	46.22	46.77
Zm00001d026178_P002	Maize	plastid	49.4	46.44
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	46.22	45.85
PGSC0003DMT400069330	Potato	cytosol	44.62	43.24
PGSC0003DMT400018375	Potato	cytosol	42.63	42.8
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	44.22	42.69
HORVU2Hr1G097780.15	Barley	golgi, mitochondrion, plastid	43.03	40.15
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	39.04	39.68
PGSC0003DMT400053882	Potato	extracellular	25.5	32.65
PGSC0003DMT400027154	Potato	plasma membrane	31.87	28.47
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	27.89	27.89
PGSC0003DMT400053877	Potato	plasma membrane	30.28	27.24
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	29.88	26.32
PGSC0003DMT400053479	Potato	plasma membrane	29.88	26.22
PGSC0003DMT400060322	Potato	mitochondrion	28.29	25.82
PGSC0003DMT400020870	Potato	plasma membrane	29.08	25.44
PGSC0003DMT400068708	Potato	plasma membrane	28.29	25.09
PGSC0003DMT400015824	Potato	plasma membrane	28.29	25.09
PGSC0003DMT400014809	Potato	peroxisome	28.69	25.09
PGSC0003DMT400064008	Potato	extracellular	11.16	25.0
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	28.69	25.0
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	28.29	24.83
PGSC0003DMT400062174	Potato	plasma membrane	27.89	24.48
PGSC0003DMT400053881	Potato	plasma membrane	29.88	24.43

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102601534	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0000003
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0006833	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987
GO:GO:0015204	GO:GO:0015250	GO:GO:0015267	GO:GO:0015840	GO:GO:0016020	GO:GO:0016021
GO:GO:0030154	GO:GO:0048235	GO:GO:0055085	GO:GO:0071918	GO:GO:0090406	InterPro:IPR023271
UniProt:M1B6T0	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400014818	PGSC:PGSC0003DMG400014818
EnsemblPlants:PGSC0003DMT400038394	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF54	SUPFAM:SSF81338
TMHMM:TMhelix	UniParc:UPI0002962527	RefSeq:XP_006358267.1	SEG:seg	:	:

Description

Aquaporin, MIP family [Source:PGSC_GENE;Acc:PGSC0003DMG400014818]

Coordinates

chr3:-:38637217..38638584

Molecular Weight (calculated)

25952.7 Da

IEP (calculated)

8.666

GRAVY (calculated)

0.707

Length

251 amino acids

Sequence
(BLAST)

001: MASLASRLQH SVTPNALRSY LAEFLSTFFF VFAAAGAAMS TRKMVPDATS DPSSLVAIAV ANAFALSVAV YISANISGGH VNPAVTFGMA VGGHISIPMS
101: IFYWISQMIG SVTACLLLKF TNQQVPTHGI PQEMTGFGAA VLEGVMTFGL VYTVYAAADP RRCVHAAIGP LAIGLMLGAN VMASGPFTGG SMNPAYSFGS
201: AVVKGSFRNQ AVYWIGPFIG AAIAGLVYDN VVFPLQVTES LRGIGGGIVA V

Best Arabidopsis Sequence Match ( AT3G47440.1 )
(BLAST)

001: MRRMIPTSFS SKFQGVLSMN ALRCYVSEFI STFFFVLAAV GSVMSSRKLM AGDVSGPFGV LIPAIANALA LSSSVYISWN VSGGHVNPAV TFAMAVAGRI
101: SVPTAMFYWT SQMIASVMAC LVLKVTVMEQ HVPIYKIAGE MTGFGASVLE GVLAFVLVYT VFTASDPRRG LPLAVGPIFI GFVAGANVLA AGPFSGGSMN
201: PACAFGSAMV YGSFKNQAVY WVGPLLGGAT AALVYDNVVV PVEDDRGSST GDAIGV

Arabidopsis Description

TIP5-1Probable aquaporin TIP5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.