Factsheet for PGSC0003DMT400077927

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole, cytosol

Predictor Summary:

plastid 2
vacuole 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	99.21	99.21
KRH23017	Soybean	cytosol, plasma membrane, vacuole	85.77	86.11
KRH10300	Soybean	endoplasmic reticulum, extracellular	52.96	83.75
GSMUA_Achr10P...	Banana	plasma membrane	81.03	81.35
HORVU3Hr1G116790.2	Barley	vacuole	80.63	80.95
TraesCS3D01G540900.1	Wheat	plasma membrane	80.24	80.56
TraesCS3A01G535300.1	Wheat	plasma membrane	80.24	80.56
PGSC0003DMT400072432	Potato	cytosol	78.66	80.24
KRH29856	Soybean	cytosol, plasma membrane, vacuole	79.84	80.16
TraesCS3B01G608500.1	Wheat	plasma membrane	79.84	80.16
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	78.66	78.97
KRH24847	Soybean	endoplasmic reticulum, plasma membrane, vacuole	76.28	78.78
Zm00001d011778_P001	Maize	plasma membrane	77.87	77.56
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	81.42	76.87
EES04303	Sorghum	cytosol	77.87	76.36
PGSC0003DMT400018375	Potato	cytosol	75.1	76.0
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	56.92	57.83
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	56.52	57.2
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	54.55	55.42
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	54.15	55.24
PGSC0003DMT400069330	Potato	cytosol	56.52	55.21
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	54.94	53.46
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	48.62	49.8
PGSC0003DMT400038394	Potato	plastid	45.85	46.22
PGSC0003DMT400053882	Potato	extracellular	30.43	39.29
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	32.02	32.27
PGSC0003DMT400053877	Potato	plasma membrane	35.57	32.26
PGSC0003DMT400020870	Potato	plasma membrane	35.97	31.71
PGSC0003DMT400027154	Potato	plasma membrane	35.18	31.67
PGSC0003DMT400015824	Potato	plasma membrane	35.18	31.45
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	34.39	30.53
PGSC0003DMT400062174	Potato	plasma membrane	34.39	30.42
PGSC0003DMT400068708	Potato	plasma membrane	33.99	30.39
PGSC0003DMT400060322	Potato	mitochondrion	32.41	29.82
PGSC0003DMT400053479	Potato	plasma membrane	33.2	29.37
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	33.2	29.17
PGSC0003DMT400053881	Potato	plasma membrane	35.18	28.99
PGSC0003DMT400014809	Potato	peroxisome	32.41	28.57
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	32.02	28.32
PGSC0003DMT400064008	Potato	extracellular	11.46	25.89

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102587828	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0071918	InterPro:IPR023271	UniProt:M1CZ23	InterPro:MIP
InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400030308	PGSC:PGSC0003DMG400030308	EnsemblPlants:PGSC0003DMT400077927	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF55	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI000296DA99
RefSeq:XP_006350747.1	:	:	:	:	:

Description

Nodulin-26 [Source:PGSC_GENE;Acc:PGSC0003DMG400030308]

Coordinates

chr6:+:56310987..56312173

Molecular Weight (calculated)

26058.6 Da

IEP (calculated)

5.477

GRAVY (calculated)

0.795

Length

253 amino acids

Sequence
(BLAST)

001: MPISRIAIGN LAEATKPDAL KAATAEFFSM LIFVFAGSGS GMAFGKLTNG GAATPAGLIS ASIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGHITL
101: FRSVLYWIAQ LLGSVVACVL LKFSTGGLET SAFALSSGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD LGIIAPIAIG FIVGANILAG GAFDGASMNP
201: AVSFGPAVVS WTWDNHWVYW LGPFGGAAIA ALLYEIIFIG QNTHEQLPCT DDY

Best Arabidopsis Sequence Match ( AT4G01470.1 )
(BLAST)

001: MPINRIAIGT PGEASRPDAI RAAFAEFFSM VIFVFAGQGS GMAYGKLTGD GPATPAGLVA ASLSHAFALF VAVSVGANVS GGHVNPAVTF GAFIGGNITL
101: LRAILYWIAQ LLGAVVACLL LKVSTGGMET AAFSLSYGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD IGIIAPLAIG LIVGANILVG GAFDGASMNP
201: AVSFGPAVVS WIWTNHWVYW VGPFIGAAIA AIVYDTIFIG SNGHEPLPSN DF

Arabidopsis Description

TIP1-3Aquaporin TIP1-3 [Source:UniProtKB/Swiss-Prot;Acc:O82598]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.