Factsheet for Solyc06g075650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
vacuole 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	99.21	99.21
KRH23017	Soybean	cytosol, plasma membrane, vacuole	86.17	86.51
KRH10300	Soybean	endoplasmic reticulum, extracellular	52.96	83.75
GSMUA_Achr10P...	Banana	plasma membrane	81.42	81.75
HORVU3Hr1G116790.2	Barley	vacuole	81.03	81.35
TraesCS3D01G540900.1	Wheat	plasma membrane	80.63	80.95
TraesCS3A01G535300.1	Wheat	plasma membrane	80.63	80.95
TraesCS3B01G608500.1	Wheat	plasma membrane	80.24	80.56
KRH29856	Soybean	cytosol, plasma membrane, vacuole	79.84	80.16
Solyc10g083880.1.1	Tomato	plastid	77.87	79.44
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	79.05	79.37
KRH24847	Soybean	endoplasmic reticulum, plasma membrane, vacuole	76.68	79.18
Zm00001d011778_P001	Maize	plasma membrane	78.26	77.95
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	81.82	77.24
EES04303	Sorghum	cytosol	78.26	76.74
Solyc06g074820.2.1	Tomato	plastid	75.49	76.4
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	57.71	58.4
Solyc12g044330.1.1	Tomato	plastid	54.94	56.05
Solyc06g072130.2.1	Tomato	extracellular	56.92	55.6
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	54.94	53.46
Solyc06g066560.1.1	Tomato	mitochondrion	55.73	51.65
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	48.62	49.8
Solyc03g093230.2.1	Tomato	plastid	46.25	46.61
Solyc09g007770.2.1	Tomato	nucleus	35.97	35.14
Solyc01g111660.2.1	Tomato	nucleus	35.57	31.8
Solyc02g083510.2.1	Tomato	nucleus	32.41	31.66
Solyc06g011350.2.1	Tomato	nucleus	34.78	31.43
Solyc11g069430.1.1	Tomato	plastid	35.57	31.36
Solyc10g084120.1.1	Tomato	nucleus	34.39	30.96
Solyc10g055630.1.1	Tomato	nucleus, plastid	34.39	30.74
Solyc01g094690.2.1	Tomato	nucleus	34.39	30.53
Solyc09g007760.2.1	Tomato	extracellular	36.36	30.07
Solyc03g096290.2.1	Tomato	nucleus	33.6	29.72
Solyc08g008050.2.1	Tomato	peroxisome	32.81	28.92
Solyc12g056220.1.1	Tomato	plastid	32.81	28.82
Solyc08g081190.2.1	Tomato	plastid	32.02	28.32
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	30.83	26.99

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EMBL:AB845617	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705
GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807
GO:GO:0055085	GO:GO:0071918	InterPro:IPR023271	UniProt:K4C9T0	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF55	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc06g075650.2	EnsemblPlants:Solyc06g075650.2.1	TMHMM:TMhelix	UniParc:UPI0001B34C0D	:	:

Description

Tonoplast intrinsic protein 12 [Source:UniProtKB/TrEMBL;Acc:K4C9T0]

Coordinates

chr6:+:47015384..47016488

Molecular Weight (calculated)

26042.5 Da

IEP (calculated)

5.477

GRAVY (calculated)

0.784

Length

253 amino acids

Sequence
(BLAST)

001: MPISRIAIGN LAEATKPDAL KAATAEFFSM LIFVFAGSGS GMAFGKLTNG GAATPAGLIS ASIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGHITL
101: FRSVLYWIAQ LLGSVVACVL LKFSTGGLET SAFALSSGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD LGIIAPIAIG FIVGANILAG GAFDGASMNP
201: AVSFGPAVVS WTWDNHWVYW LGPFGGAAIA ALVYEIIFIG QNTHEQLPTT DDY

Best Arabidopsis Sequence Match ( AT4G01470.1 )
(BLAST)

001: MPINRIAIGT PGEASRPDAI RAAFAEFFSM VIFVFAGQGS GMAYGKLTGD GPATPAGLVA ASLSHAFALF VAVSVGANVS GGHVNPAVTF GAFIGGNITL
101: LRAILYWIAQ LLGAVVACLL LKVSTGGMET AAFSLSYGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD IGIIAPLAIG LIVGANILVG GAFDGASMNP
201: AVSFGPAVVS WIWTNHWVYW VGPFIGAAIA AIVYDTIFIG SNGHEPLPSN DF

Arabidopsis Description

TIP1-3Aquaporin TIP1-3 [Source:UniProtKB/Swiss-Prot;Acc:O82598]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.