Factsheet for Solyc10g083880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
vacuole 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g019820.2.1
Solyc06g066560.1.1
Solyc06g072130.2.1
Solyc10g083880.1.1
Solyc10g084120.1.1
Solyc12g044330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	Solyc03g019820.2.1	AT1G73190.1	21798944
AT2G36830.1	Solyc06g072130.2.1	AT1G73190.1	21798944
AT3G26520.1	Solyc03g019820.2.1	AT1G73190.1	23163742
AT3G26520.1	Solyc06g072130.2.1	AT1G73190.1	23163742
AT3G26520.1	Solyc06g066560.1.1	AT3G16240.1	23163742
AT3G26520.1	Solyc12g044330.1.1	AT3G16240.1	23163742
AT3G26520.1	Solyc10g083880.1.1	AT3G26520.1	23163742
AT3G26520.1	Solyc10g084120.1.1	AT3G53420.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072432	Potato	cytosol	97.98	97.98
CDY66645	Canola	plastid	75.0	84.16
CDY67380	Canola	plastid	75.0	84.16
Bra017222.1-P	Field mustard	cytosol	84.27	83.27
CDY53270	Canola	plasma membrane	84.27	83.27
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	83.47	82.47
CDY13639	Canola	plasma membrane	83.06	81.42
VIT_08s0007g04780.t01	Wine grape	cytosol	82.26	81.27
Bra025210.1-P	Field mustard	plasma membrane	82.66	81.03
CDX83623	Canola	golgi, plasma membrane, plastid	82.66	81.03
KRH67767	Soybean	mitochondrion	81.05	80.4
Solyc06g074820.2.1	Tomato	plastid	79.44	78.8
KRG96046	Soybean	nucleus	79.44	78.8
AT3G26520.1	Thale cress	plasma membrane	80.24	78.66
Bra032937.1-P	Field mustard	plasma membrane	80.24	78.66
CDY48983	Canola	plasma membrane	80.24	78.66
CDY28539	Canola	plasma membrane	80.24	78.66
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	79.44	77.87
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	76.61	75.7
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	63.31	62.8
Solyc12g044330.1.1	Tomato	plastid	62.1	62.1
Solyc06g072130.2.1	Tomato	extracellular	61.69	59.07
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	60.89	58.08
Solyc06g066560.1.1	Tomato	mitochondrion	62.5	56.78
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	53.23	53.44
Solyc03g093230.2.1	Tomato	plastid	46.37	45.82
Solyc09g007770.2.1	Tomato	nucleus	37.1	35.52
Solyc02g083510.2.1	Tomato	nucleus	33.87	32.43
Solyc11g069430.1.1	Tomato	plastid	37.1	32.06
Solyc01g111660.2.1	Tomato	nucleus	36.29	31.8
Solyc06g011350.2.1	Tomato	nucleus	35.89	31.79
Solyc10g055630.1.1	Tomato	nucleus, plastid	35.48	31.1
Solyc10g084120.1.1	Tomato	nucleus	35.08	30.96
Solyc09g007760.2.1	Tomato	extracellular	37.5	30.39
Solyc01g094690.2.1	Tomato	nucleus	34.68	30.18
Solyc03g096290.2.1	Tomato	nucleus	33.87	29.37
Solyc08g081190.2.1	Tomato	plastid	33.06	28.67
Solyc12g056220.1.1	Tomato	plastid	33.06	28.47
Solyc08g008050.2.1	Tomato	peroxisome	32.66	28.22
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	31.85	27.34

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807	GO:GO:0055085
InterPro:IPR023271	UniProt:K4D3H4	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc10g083880.1	EnsemblPlants:Solyc10g083880.1.1
TMHMM:TMhelix	UniParc:UPI000276A0BD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:63606672..63608084

Molecular Weight (calculated)

25354.0 Da

IEP (calculated)

7.070

GRAVY (calculated)

0.823

Length

248 amino acids

Sequence
(BLAST)

001: MPISRIAIGR REEATHPDAL KAALAEFIST LIFVFAGSGS GVAFSKLTGG GANTPTGLIA AAIAHAFGLF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSVVACLL LKFTTGGMEI GAFSLSNGVG VGNALVLEIV MTFGLVYTVY ATAVDPKKGS LGTIAPIAIG FIVGANILVG GAFDGASMNP
201: AVSFGPALVS WAWSNHWVYW VGPLIGGGLA GLIYEFFFIN QTHEPLPQ

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.