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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • vacuole 3
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 3
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001626.1-P
Bra006997.1-P
Bra008079.1-P
Bra016014.1-P
Bra025210.1-P
Bra032937.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26520.1 Bra008079.1-P AT1G73190.1 23163742
AT3G26520.1 Bra016014.1-P AT1G73190.1 23163742
AT3G26520.1 Bra001626.1-P AT3G16240.1 23163742
AT3G26520.1 Bra025210.1-P AT3G26520.1 23163742
AT3G26520.1 Bra032937.1-P AT3G26520.1 23163742
AT3G26520.1 Bra006997.1-P AT3G53420.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48983 Canola plasma membrane 100.0 100.0
CDY28539 Canola plasma membrane 100.0 100.0
Bra025210.1-P Field mustard plasma membrane 92.89 92.89
AT3G26520.1 Thale cress plasma membrane 91.3 91.3
Bra017222.1-P Field mustard cytosol 85.77 86.45
Solyc10g083880.1.1 Tomato plastid 78.66 80.24
PGSC0003DMT400072432 Potato cytosol 78.66 80.24
Os03t0146100-01 Rice nucleus 78.66 79.6
KRH67767 Soybean mitochondrion 78.26 79.2
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 77.87 78.8
KRG96046 Soybean nucleus 77.87 78.8
VIT_08s0007g04780.t01 Wine grape cytosol 77.47 78.09
EER92857 Sorghum cytosol 77.08 78.0
Zm00001d027652_P001 Maize plasma membrane 75.49 76.4
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 74.7 75.6
TraesCS4B01G310900.1 Wheat unclear 74.7 75.6
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 74.7 75.6
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 74.7 75.6
HORVU4Hr1G079230.1 Barley vacuole 73.91 74.8
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 73.12 73.71
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 71.54 70.43
Bra037415.1-P Field mustard cytosol 69.17 69.44
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 67.98 68.53
Bra022131.1-P Field mustard extracellular 54.15 67.16
Bra026245.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 64.43 65.2
Bra001626.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 63.24 64.26
Bra021171.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 52.96 63.81
Bra027181.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 62.45 63.71
Bra024943.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 62.06 62.55
Bra008079.1-P Field mustard golgi, mitochondrion, plasma membrane 60.08 57.14
Bra016014.1-P Field mustard cytosol 59.68 56.98
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 56.13 53.18
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 55.34 52.43
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 50.99 51.81
Bra018148.1-P Field mustard extracellular, plasma membrane, plastid 38.74 38.43
Bra005216.1-P Field mustard cytosol, golgi, plasma membrane 31.62 34.63
Bra011585.1-P Field mustard plasma membrane 37.15 33.45
Bra017697.1-P Field mustard cytosol 36.76 33.1
Bra020238.1-P Field mustard plasma membrane 36.76 32.86
Bra023103.1-P Field mustard plasma membrane 36.76 32.63
Bra006997.1-P Field mustard plasma membrane 36.76 32.4
Bra034675.1-P Field mustard cytosol, peroxisome, plasma membrane 35.97 32.38
Bra006650.1-P Field mustard plasma membrane 36.36 32.28
Bra002462.1-P Field mustard cytosol 32.81 31.92
Bra023102.1-P Field mustard plasma membrane 35.57 31.8
Bra000111.1-P Field mustard plasma membrane 35.18 30.9
Bra007100.1-P Field mustard plasma membrane 34.78 30.77
Bra003196.1-P Field mustard plasma membrane 34.78 30.77
Bra005215.1-P Field mustard cytosol, peroxisome, plasma membrane 28.46 30.25
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 33.99 30.07
Bra032644.1-P Field mustard plasma membrane 33.6 29.72
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 33.6 29.51
Bra014437.1-P Field mustard plasma membrane 33.2 29.37
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 33.2 29.27
Bra007603.1-P Field mustard plasma membrane 32.81 29.02
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 32.02 28.32
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 28.06 25.36
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlantsGene:Bra032937EnsemblPlants:Bra032937.1
EnsemblPlants:Bra032937.1-PGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR023271UniProt:M4EVV4
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelixUniParc:UPI00019D340A::
Description
AT3G26520 (E=1e-133) TIP2, SITIP, GAMMA-TIP2, TIP1;2 | TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel
Coordinates
chrA02:+:22406799..22408067
Molecular Weight (calculated)
25794.3 Da
IEP (calculated)
5.432
GRAVY (calculated)
0.834
Length
253 amino acids
Sequence
(BLAST)
001: MPTRNIAIGG VQEEVTHPSA LRAALAEFIS TLIFVFAGSG SGIAFNKLTD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGAFLGGNIT
101: LLRGLLYWIA QLLGSVVACF LLQFATGGLA VPAFGLSAGV GTLNGLVFEI VMTFGLVYTV YATAIDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWSWSNHWIY WVGPLVGGGL AGIIYDFVYI IENGHEQLPT TDY
Best Arabidopsis Sequence Match ( AT3G26520.1 )
(BLAST)
001: MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT
101: LLRGILYWIA QLLGSVAACF LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI DENAHEQLPT TDY
Arabidopsis Description
TIP1-2Aquaporin TIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q41963]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.