Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67380 | Canola | plastid | 75.3 | 85.52 |
| CDY66645 | Canola | plastid | 75.3 | 85.52 |
| Bra017222.1-P | Field mustard | cytosol | 85.26 | 85.26 |
| AT2G36830.1 | Thale cress | golgi, plasma membrane, vacuole | 84.86 | 84.86 |
| VIT_13s0019g00330.t01 | Wine grape | cytosol, plasma membrane, vacuole | 84.46 | 84.46 |
| CDY53270 | Canola | plasma membrane | 84.06 | 84.06 |
| KRG96046 | Soybean | nucleus | 83.27 | 83.6 |
| KRH67767 | Soybean | mitochondrion | 82.87 | 83.2 |
| GSMUA_Achr8P12920_001 | Banana | cytosol, plasma membrane, vacuole | 82.47 | 82.8 |
| GSMUA_Achr1P01270_001 | Banana | cytosol, plasma membrane, vacuole | 82.07 | 82.4 |
| PGSC0003DMT400072432 | Potato | cytosol | 81.27 | 82.26 |
| Solyc10g083880.1.1 | Tomato | plastid | 81.27 | 82.26 |
| CDY13639 | Canola | plasma membrane | 82.47 | 81.82 |
| CDX83623 | Canola | golgi, plasma membrane, plastid | 82.07 | 81.42 |
| Bra025210.1-P | Field mustard | plasma membrane | 82.07 | 81.42 |
| Os03t0146100-01 | Rice | nucleus | 80.88 | 81.2 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 80.88 | 81.2 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 80.88 | 80.88 |
| Zm00001d027652_P001 | Maize | plasma membrane | 80.08 | 80.4 |
| EER92857 | Sorghum | cytosol | 78.09 | 78.4 |
| AT3G26520.1 | Thale cress | plasma membrane | 78.88 | 78.26 |
| GSMUA_Achr5P19470_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.09 | 78.09 |
| Bra032937.1-P | Field mustard | plasma membrane | 78.09 | 77.47 |
| CDY28539 | Canola | plasma membrane | 78.09 | 77.47 |
| CDY48983 | Canola | plasma membrane | 78.09 | 77.47 |
| VIT_06s0004g04120.t01 | Wine grape | cytosol, plasma membrane, vacuole | 82.07 | 76.87 |
| TraesCS4A01G410800.1 | Wheat | golgi, plasma membrane, vacuole | 76.1 | 76.4 |
| TraesCS4B01G310900.1 | Wheat | unclear | 75.7 | 76.0 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 75.3 | 75.6 |
| TraesCS4D01G308800.1 | Wheat | golgi, plasma membrane, vacuole | 73.31 | 71.6 |
| VIT_09s0002g04020.t01 | Wine grape | plasma membrane, vacuole | 62.55 | 63.05 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 59.76 | 60.0 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 29.48 | 59.68 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 61.35 | 59.46 |
| VIT_16s0022g00330.t01 | Wine grape | cytosol, extracellular, plasma membrane, plastid | 49.4 | 49.8 |
| VIT_15s0021g02420.t01 | Wine grape | extracellular | 43.43 | 43.43 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 50.6 | 42.19 |
| VIT_18s0001g06480.t01 | Wine grape | cytosol, extracellular, vacuole | 17.53 | 31.21 |
| VIT_06s0004g02850.t01 | Wine grape | plasma membrane | 33.86 | 30.36 |
| VIT_13s0019g04280.t01 | Wine grape | plasma membrane | 34.26 | 30.28 |
| VIT_08s0040g01890.t01 | Wine grape | plasma membrane | 34.26 | 29.97 |
| VIT_03s0038g02520.t01 | Wine grape | plasma membrane | 32.67 | 29.39 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 33.07 | 28.92 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 32.67 | 28.67 |
| VIT_12s0034g00250.t01 | Wine grape | cytosol, extracellular, plastid | 13.55 | 28.57 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 31.87 | 27.97 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 31.08 | 27.27 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:100233004 | wikigene:100233004 | MapMan:24.3.1.3 | ProteinID:ABH09330 | ProteinID:ABH09330.1 |
| EMBL:AM432932 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | ProteinID:CAN69323 | ProteinID:CAN69323.1 | ProteinID:CCB55350 |
| ProteinID:CCB55350.1 | EMBL:DQ834702 | UniProt:F6HKC8 | EMBL:FN595991 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 |
| GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF265 | SUPFAM:SSF81338 | TIGR:TC53408 | TIGR:TC62924 | TIGR:TC66009 |
| TIGR:TC70484 | TIGRFAMs:TIGR00861 | EntrezGene:TIP1;2 | wikigene:TIP1;2 | TMHMM:TMhelix | UniParc:UPI00015CCFBE |
| ArrayExpress:VIT_08s0007g04780 | EnsemblPlantsGene:VIT_08s0007g04780 | EnsemblPlants:VIT_08s0007g04780.t01 | unigene:Vvi.92 | SEG:seg | : |
Description
No Description!
Coordinates
chr8:+:18763893..18765006
Molecular Weight (calculated)
26209.7 Da
IEP (calculated)
6.338
GRAVY (calculated)
0.697
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIRNIAFGR PEEATRPDAL KAAFAEFICT LIFVFAGEGS GMAFNKLTDN GSTTPAGLVA ASLAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSTVACLL LKFSTNGMTT SAFSLSSGVT VWNAFVFEIV MTFGLVYTVY ATAIDPKKGN LGIIAPIAIG FIVGANILAG GAFDGASMNP
201: AVSFGPALVS WTWTNHWVYW AGPLIGGGLA GLVYEVFFIS HTHEQLPSTD Y
101: LRGILYWIAQ LLGSTVACLL LKFSTNGMTT SAFSLSSGVT VWNAFVFEIV MTFGLVYTVY ATAIDPKKGN LGIIAPIAIG FIVGANILAG GAFDGASMNP
201: AVSFGPALVS WTWTNHWVYW AGPLIGGGLA GLVYEVFFIS HTHEQLPSTD Y
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.