Factsheet for Bra017222.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008079.1-P
Bra016014.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	Bra008079.1-P	AT1G73190.1	21798944
AT2G36830.1	Bra016014.1-P	AT1G73190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66645	Canola	plastid	88.05	100.0
CDY67380	Canola	plastid	88.05	100.0
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	93.23	93.23
Bra025210.1-P	Field mustard	plasma membrane	89.24	88.54
Bra032937.1-P	Field mustard	plasma membrane	86.45	85.77
VIT_08s0007g04780.t01	Wine grape	cytosol	85.26	85.26
PGSC0003DMT400072432	Potato	cytosol	84.06	85.08
Solyc10g083880.1.1	Tomato	plastid	83.27	84.27
KRH67767	Soybean	mitochondrion	83.27	83.6
KRG96046	Soybean	nucleus	83.27	83.6
Os03t0146100-01	Rice	nucleus	82.07	82.4
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	80.08	80.4
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	80.08	80.4
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	79.28	79.6
EER92857	Sorghum	cytosol	78.88	79.2
Zm00001d027652_P001	Maize	plasma membrane	78.09	78.4
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	77.69	78.0
TraesCS4B01G310900.1	Wheat	unclear	77.69	78.0
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	77.69	77.69
HORVU4Hr1G079230.1	Barley	vacuole	76.89	77.2
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	72.91	72.91
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	74.1	72.37
Bra037415.1-P	Field mustard	cytosol	71.71	71.43
Bra022131.1-P	Field mustard	extracellular	53.78	66.18
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	64.14	64.4
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	63.35	63.35
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	61.75	62.25
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.79	61.9
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	60.96	61.69
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	59.76	56.39
Bra016014.1-P	Field mustard	cytosol	58.57	55.47
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	52.19	52.61
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	55.78	52.43
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	55.38	52.06
Bra018148.1-P	Field mustard	extracellular, plasma membrane, plastid	40.64	40.0
Bra005216.1-P	Field mustard	cytosol, golgi, plasma membrane	29.88	32.47
Bra017697.1-P	Field mustard	cytosol	35.06	31.32
Bra011585.1-P	Field mustard	plasma membrane	35.06	31.32
Bra020238.1-P	Field mustard	plasma membrane	35.06	31.1
Bra002462.1-P	Field mustard	cytosol	31.87	30.77
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.26	30.61
Bra006650.1-P	Field mustard	plasma membrane	34.66	30.53
Bra006997.1-P	Field mustard	plasma membrane	34.66	30.31
Bra000111.1-P	Field mustard	plasma membrane	34.66	30.21
Bra007100.1-P	Field mustard	plasma membrane	34.26	30.07
Bra023103.1-P	Field mustard	plasma membrane	33.86	29.82
Bra033248.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.47	29.37
Bra023102.1-P	Field mustard	plasma membrane	33.07	29.33
Bra014437.1-P	Field mustard	plasma membrane	33.07	29.02
Bra003196.1-P	Field mustard	plasma membrane	33.07	29.02
Bra032644.1-P	Field mustard	plasma membrane	33.07	29.02
Bra000974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.07	28.82
Bra007603.1-P	Field mustard	plasma membrane	32.67	28.67
Bra019307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.67	28.57
Bra004950.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.27	28.32
Bra005215.1-P	Field mustard	cytosol, peroxisome, plasma membrane	25.9	27.31
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.69	25.71

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra017222	EnsemblPlants:Bra017222.1
EnsemblPlants:Bra017222.1-P	GO:GO:0000326	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0009536	GO:GO:0009705	GO:GO:0009941	GO:GO:0015204	GO:GO:0015250
GO:GO:0015267	GO:GO:0015840	GO:GO:0016020	GO:GO:0016021	GO:GO:0042807	GO:GO:0055085
GO:GO:0071918	GO:GO:0080170	InterPro:IPR023271	UniProt:M4DL41	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	SUPFAM:SSF81338
TMHMM:TMhelix	UniParc:UPI00019D340B	SEG:seg	:	:	:

Description

AT2G36830 (E=4e-127) GAMMA-TIP, TIP1;1, GAMMA-TIP1 | GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel

Coordinates

chrA04:+:15938519..15939637

Molecular Weight (calculated)

25556.1 Da

IEP (calculated)

6.505

GRAVY (calculated)

0.817

Length

251 amino acids

Sequence
(BLAST)

001: MPIRNIAVGS PNEATRPDAL KAALAEFIST MIFVFAGSGS GMAFNKLTEN GATTPAGLVA ASLAHAFGLF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSVVACLL LKFATGGLVV PAFGLSAGVG VSNALVFEIV MTFGLVYTVY ATAVDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WSWNNHWVYW AGPLVGGGLA GLIYEVFFIN TTHEQLPTTD Y

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.