Factsheet for Bra005215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003196.1-P
Bra007100.1-P
Bra007603.1-P
Bra011585.1-P
Bra014437.1-P
Bra017697.1-P
Bra019307.1-P
Bra027174.1-P
Bra034675.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37180.1	Bra027174.1-P	AT3G16310.1	21798944
AT2G37180.1	Bra003196.1-P	AT3G54820.1	21798944
AT2G37180.1	Bra007100.1-P	AT3G54820.1	21798944
AT2G37180.1	Bra007603.1-P	AT3G61430.1	21798944
AT2G37180.1	Bra014437.1-P	AT3G61430.1	21798944
AT2G37180.1	Bra019307.1-P	AT4G23400.1	21798944
AT2G37180.1	Bra011585.1-P	AT4G35100.1	21798944
AT2G37180.1	Bra017697.1-P	AT4G35100.1	21798944
AT2G37180.1	Bra034675.1-P	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023102.1-P	Field mustard	plasma membrane	97.9	82.33
Bra023103.1-P	Field mustard	plasma membrane	97.06	81.05
AT2G37180.1	Thale cress	plasma membrane	93.7	78.25
Bra005216.1-P	Field mustard	cytosol, golgi, plasma membrane	75.21	77.49
CDX74984	Canola	cytosol, peroxisome, plasma membrane	99.16	76.13
Bra006997.1-P	Field mustard	plasma membrane	90.34	74.91
AT2G37170.2	Thale cress	plasma membrane	94.54	68.6
Bra006650.1-P	Field mustard	plasma membrane	81.93	68.42
Bra020238.1-P	Field mustard	plasma membrane	81.09	68.2
PGSC0003DMT400027154	Potato	plasma membrane	79.41	67.26
EER98451	Sorghum	plasma membrane	81.51	66.9
Os07t0448800-01	Rice	plasma membrane	81.51	66.9
Zm00001d019563_P006	Maize	plasma membrane	81.09	66.55
TraesCS2A01G198500.1	Wheat	plasma membrane	81.09	66.55
Solyc10g084120.1.1	Tomato	nucleus	78.57	66.55
TraesCS2D01G206300.1	Wheat	golgi	80.67	66.21
TraesCS2B01G225900.1	Wheat	golgi	80.67	66.21
Bra002462.1-P	Field mustard	cytosol	72.27	66.15
Zm00001d005421_P001	Maize	plasma membrane	80.67	65.75
Bra003196.1-P	Field mustard	plasma membrane	76.89	63.99
Bra007100.1-P	Field mustard	plasma membrane	76.89	63.99
Bra000111.1-P	Field mustard	plasma membrane	73.95	61.11
Bra017697.1-P	Field mustard	cytosol	71.43	60.5
Bra011585.1-P	Field mustard	plasma membrane	71.43	60.5
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.59	59.79
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	81.09	56.6
Bra019307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.29	53.31
Bra014437.1-P	Field mustard	plasma membrane	63.87	53.15
Bra033248.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.87	53.15
Bra000974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.29	53.12
Bra007603.1-P	Field mustard	plasma membrane	63.45	52.8
Bra004950.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.45	52.8
Bra032644.1-P	Field mustard	plasma membrane	63.45	52.8
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	52.1	44.29
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	31.93	30.65
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	31.51	30.12
Bra037415.1-P	Field mustard	cytosol	31.51	29.76
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	25.63	29.05
Bra032937.1-P	Field mustard	plasma membrane	30.25	28.46
Bra025210.1-P	Field mustard	plasma membrane	29.41	27.67
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	28.57	27.09
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	29.83	26.69
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	27.73	26.51
Bra022131.1-P	Field mustard	extracellular	22.69	26.47
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	27.73	26.4
Bra016014.1-P	Field mustard	cytosol	28.99	26.04
Bra017222.1-P	Field mustard	cytosol	27.31	25.9
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	28.99	25.84
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	28.15	25.09
Bra018148.1-P	Field mustard	extracellular, plasma membrane, plastid	23.11	21.57

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra005215	EnsemblPlants:Bra005215.1
EnsemblPlants:Bra005215.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M4CLX8
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF260	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI00025479B3	SEG:seg	:

Description

AT2G37170 (E=3e-098) PIP2B, PIP2;2 | PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel

Coordinates

chrA05:-:4067080..4068219

Molecular Weight (calculated)

25286.5 Da

IEP (calculated)

7.375

GRAVY (calculated)

0.519

Length

238 amino acids

Sequence
(BLAST)

001: MAKDVEGAEG FAARDYEDPP PTPFFDAEEL TKWSLYRAVI AEFVATLLFL YVTVLTVIGY KISSDTKAGG DECGGVGILG ISWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL VRAVLYMVAQ CLGAICGVGF VKAFQSAYYV RYGGGANSLA DGYSTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPW
201: IFWVGPFIGA AIAAFYHQFV LRASGSKSLG SFRSAANV

Best Arabidopsis Sequence Match ( AT2G37170.1 )
(BLAST)

001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.