Factsheet for Solyc10g084120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094690.2.1
Solyc01g111660.2.1
Solyc03g096290.2.1
Solyc03g120880.2.1
Solyc08g008050.2.1
Solyc08g081190.2.1
Solyc10g084120.1.1
Solyc12g056220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37180.1	Solyc01g094690.2.1	AT1G01620.1	21798944
AT2G37180.1	Solyc03g096290.2.1	AT1G01620.1	21798944
AT2G37180.1	Solyc08g008050.2.1	AT1G01620.1	21798944
AT2G37180.1	Solyc08g081190.2.1	AT1G01620.1	21798944
AT2G37180.1	Solyc12g056220.1.1	AT1G01620.1	21798944
AT2G37180.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT2G37180.1	Solyc01g094690.2.1	AT3G61430.1	21798944
AT2G37180.1	Solyc03g096290.2.1	AT3G61430.1	21798944
AT2G37180.1	Solyc08g008050.2.1	AT3G61430.1	21798944
AT2G37180.1	Solyc08g081190.2.1	AT3G61430.1	21798944
AT2G37180.1	Solyc12g056220.1.1	AT3G61430.1	21798944
AT2G37180.1	Solyc01g094690.2.1	AT4G23400.1	21798944
AT2G37180.1	Solyc03g096290.2.1	AT4G23400.1	21798944
AT2G37180.1	Solyc08g008050.2.1	AT4G23400.1	21798944
AT2G37180.1	Solyc08g081190.2.1	AT4G23400.1	21798944
AT2G37180.1	Solyc12g056220.1.1	AT4G23400.1	21798944
AT2G37180.1	Solyc01g111660.2.1	AT4G35100.1	21798944
AT3G53420.1	Solyc10g084120.1.1	AT3G53420.1	19258017

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027154	Potato	plasma membrane	98.93	98.93
Solyc09g007770.2.1	Tomato	nucleus	82.56	89.58
CDY70391	Canola	extracellular, golgi	46.62	82.39
Bra005216.1-P	Field mustard	cytosol, golgi, plasma membrane	66.55	80.95
EER98451	Sorghum	plasma membrane	83.27	80.69
TraesCS2A01G198500.1	Wheat	plasma membrane	83.27	80.69
Bra023102.1-P	Field mustard	plasma membrane	81.14	80.57
CDY46758	Canola	plasma membrane	81.14	80.57
CDY56697	Canola	plasma membrane	82.21	80.49
Zm00001d019563_P006	Maize	plasma membrane	82.92	80.34
TraesCS2D01G206300.1	Wheat	golgi	82.92	80.34
TraesCS2B01G225900.1	Wheat	golgi	82.92	80.34
CDX78177	Canola	plasma membrane	81.85	80.14
Bra006997.1-P	Field mustard	plasma membrane	81.85	80.14
CDX91340	Canola	plasma membrane	81.14	80.0
CDY46759	Canola	plasma membrane	81.14	80.0
Bra023103.1-P	Field mustard	plasma membrane	81.14	80.0
AT3G53420.1	Thale cress	plasma membrane	81.49	79.79
Solyc09g007760.2.1	Tomato	extracellular	86.83	79.74
Os07t0448800-01	Rice	plasma membrane	82.21	79.66
AT2G37180.1	Thale cress	plasma membrane	80.78	79.65
CDY13298	Canola	plasma membrane	81.14	79.44
CDX91341	Canola	plasma membrane	80.07	78.95
Bra005215.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.55	78.57
Solyc06g011350.2.1	Tomato	nucleus	78.29	78.57
Solyc11g069430.1.1	Tomato	plastid	80.07	78.4
Solyc10g055630.1.1	Tomato	nucleus, plastid	78.65	78.09
CDX74983	Canola	cytosol, peroxisome, plasma membrane	54.45	77.67
Zm00001d005421_P001	Maize	plasma membrane	80.07	77.05
Solyc01g111660.2.1	Tomato	nucleus	76.51	75.97
Solyc02g083510.2.1	Tomato	nucleus	68.68	74.52
CDX74984	Canola	cytosol, peroxisome, plasma membrane	81.14	73.55
AT2G37170.2	Thale cress	plasma membrane	81.14	69.51
Solyc03g096290.2.1	Tomato	nucleus	69.75	68.53
Solyc01g094690.2.1	Tomato	nucleus	69.39	68.42
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	82.92	68.33
Solyc08g008050.2.1	Tomato	peroxisome	69.39	67.94
Solyc12g056220.1.1	Tomato	plastid	69.04	67.36
Solyc08g081190.2.1	Tomato	plastid	68.33	67.13
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	59.79	58.13
Solyc12g044330.1.1	Tomato	plastid	35.23	39.92
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	33.45	37.6
Solyc06g066560.1.1	Tomato	mitochondrion	35.23	36.26
Solyc06g074820.2.1	Tomato	plastid	32.03	36.0
Solyc10g083880.1.1	Tomato	plastid	30.96	35.08
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	30.96	34.39
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	29.89	34.01
Solyc06g072130.2.1	Tomato	extracellular	31.32	33.98
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	29.89	32.31
Solyc03g093230.2.1	Tomato	plastid	28.11	31.47

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EMBL:AB845611	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	UniProt:K4D3J8	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF158	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc10g084120.1	EnsemblPlants:Solyc10g084120.1.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000276A253	:

Description

Plasmamembrane intrinsic protein 25 [Source:UniProtKB/TrEMBL;Acc:K4D3J8]

Coordinates

chr10:-:63772284..63774379

Molecular Weight (calculated)

30159.7 Da

IEP (calculated)

8.420

GRAVY (calculated)

0.460

Length

281 amino acids

Sequence
(BLAST)

001: MAKDMEYGND QYAPSKDYQD PPPAPLIDPE ELGKWSFYRA IIAEFIATLL FLYITVLTVI GYKSQSDGDQ CGGVGILGIA WAFGGMIFVL VYCTAGISGG
101: HINPAVTFGL LLARKVSLVR AIFYIVAQCL GAICGCGLVK LFQKAYYVKY GGGANELAVG YNIATGLGAE IIGTFVLVYT VFSATDPKRN ARDSHVPVLA
201: PLPIGFAVFM VHLATIPITG TGINPARSFG AAVIYGKNKS WDDQWIFWVG PFIGAAIAAI YHQYILRAGA SKSINSFRSN A

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.