Factsheet for Solyc06g074820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
vacuole 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018375	Potato	cytosol	99.6	99.6
Zm00001d027652_P001	Maize	plasma membrane	81.2	81.2
Os03t0146100-01	Rice	nucleus	81.2	81.2
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	80.4	80.4
EER92857	Sorghum	cytosol	80.0	80.0
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	80.0	80.0
HORVU4Hr1G079230.1	Barley	vacuole	80.0	80.0
TraesCS4B01G310900.1	Wheat	unclear	80.0	80.0
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	80.0	80.0
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	79.6	79.6
Solyc10g083880.1.1	Tomato	plastid	78.8	79.44
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	77.2	76.89
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	78.0	75.88
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	76.4	75.49
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	60.0	60.0
Solyc12g044330.1.1	Tomato	plastid	58.0	58.47
Solyc06g066560.1.1	Tomato	mitochondrion	58.8	53.85
Solyc06g072130.2.1	Tomato	extracellular	54.4	52.51
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	51.6	52.23
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	53.6	51.54
Solyc03g093230.2.1	Tomato	plastid	43.2	43.03
Solyc09g007770.2.1	Tomato	nucleus	37.2	35.91
Solyc10g084120.1.1	Tomato	nucleus	36.0	32.03
Solyc06g011350.2.1	Tomato	nucleus	34.8	31.07
Solyc02g083510.2.1	Tomato	nucleus	32.0	30.89
Solyc10g055630.1.1	Tomato	nucleus, plastid	34.8	30.74
Solyc01g111660.2.1	Tomato	nucleus	34.8	30.74
Solyc09g007760.2.1	Tomato	extracellular	37.6	30.72
Solyc11g069430.1.1	Tomato	plastid	35.2	30.66
Solyc01g094690.2.1	Tomato	nucleus	33.6	29.47
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	32.8	28.37
Solyc03g096290.2.1	Tomato	nucleus	32.4	28.32
Solyc12g056220.1.1	Tomato	plastid	32.0	27.78
Solyc08g008050.2.1	Tomato	peroxisome	31.6	27.53
Solyc08g081190.2.1	Tomato	plastid	30.8	26.92

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EMBL:AB211518	EMBL:AB845616	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0009705	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0042807	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	UniProt:Q53U42	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc06g074820.2	EnsemblPlants:Solyc06g074820.2.1	TMHMM:TMhelix	UniParc:UPI000050910F	:	:

Description

Similar to aquaporin [Source:UniProtKB/TrEMBL;Acc:Q53U42]

Coordinates

chr6:+:46357575..46359925

Molecular Weight (calculated)

25737.2 Da

IEP (calculated)

6.127

GRAVY (calculated)

0.792

Length

250 amino acids

Sequence
(BLAST)

001: MPINQITIGS HEELRHPGAL KAALAEFIST LIFVFAGQGS GMAFNKLTDG VATPAGLISA SIAHAFGLFV AVSVGANISG GHVNPAVTFG AFVGGNITLF
101: RGILYIIAQL LGSTAACALL EFATGGMSTG SFALSAGVSV WNAFVFEIVM TFGLVYTVYA TAVDPKKGDL GVIAPIAIGF IVGANILAGG AFTGASMNPA
201: VSFGPSLVSW TWTHQWVYWA GPLIGGGLAG FIYEFIFISH THEQIPSGDF

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [golgi,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.