Factsheet for GSMUA_Achr11P02240_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

plastid 2
vacuole 4
cytosol 1
extracellular 2
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P01270_001
GSMUA_Achr2P10640_001
GSMUA_Achr4P26010_001
GSMUA_Achr5P19470_001
GSMUA_Achr6P05830_001
GSMUA_Achr8P12920_001
GSMUA_Achr9P28940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	GSMUA_Achr2P10640_001	AT1G73190.1	21798944
AT2G36830.1	GSMUA_Achr4P26010_001	AT1G73190.1	21798944
AT3G26520.1	GSMUA_Achr2P10640_001	AT1G73190.1	23163742
AT3G26520.1	GSMUA_Achr4P26010_001	AT1G73190.1	23163742
AT3G26520.1	GSMUA_Achr10P...	AT3G16240.1	23163742
AT3G26520.1	GSMUA_Achr6P05830_001	AT3G16240.1	23163742
AT3G26520.1	GSMUA_Achr9P28940_001	AT3G16240.1	23163742
AT3G26520.1	GSMUA_Achr11P...	AT3G26520.1	23163742
AT3G26520.1	GSMUA_Achr1P01270_001	AT3G26520.1	23163742
AT3G26520.1	GSMUA_Achr5P19470_001	AT3G26520.1	23163742
AT3G26520.1	GSMUA_Achr8P12920_001	AT3G26520.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	94.0	94.0
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	88.4	88.05
Os03t0146100-01	Rice	nucleus	86.4	86.4
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	84.8	84.8
EER92857	Sorghum	cytosol	84.8	84.8
Zm00001d027652_P001	Maize	plasma membrane	84.0	84.0
TraesCS4B01G310900.1	Wheat	unclear	82.0	82.0
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	81.6	81.6
HORVU4Hr1G079230.1	Barley	vacuole	81.2	81.2
VIT_08s0007g04780.t01	Wine grape	cytosol	81.2	80.88
CDY66645	Canola	plastid	71.2	80.54
CDY67380	Canola	plastid	71.2	80.54
Solyc06g074820.2.1	Tomato	plastid	79.6	79.6
Bra017222.1-P	Field mustard	cytosol	79.6	79.28
PGSC0003DMT400018375	Potato	cytosol	79.2	79.2
CDY53270	Canola	plasma membrane	79.2	78.88
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	79.6	77.43
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	77.6	77.29
KRG96046	Soybean	nucleus	77.2	77.2
KRH67767	Soybean	mitochondrion	76.8	76.8
CDX83623	Canola	golgi, plasma membrane, plastid	77.6	76.68
CDY13639	Canola	plasma membrane	77.6	76.68
Bra025210.1-P	Field mustard	plasma membrane	77.2	76.28
GSMUA_Achr10P...	Banana	plasma membrane	76.8	76.19
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	76.8	76.19
AT3G26520.1	Thale cress	plasma membrane	75.6	74.7
Bra032937.1-P	Field mustard	plasma membrane	75.6	74.7
CDY28539	Canola	plasma membrane	75.6	74.7
CDY48983	Canola	plasma membrane	75.6	74.7
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	72.4	72.11
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	63.6	64.9
GSMUA_Achr9P28940_001	Banana	plasma membrane	62.4	63.67
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	62.8	63.05
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	62.4	62.65
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	60.8	62.55
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	60.8	59.84
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	59.6	58.66
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	52.8	53.01
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	45.2	44.31
GSMUA_Achr1P13800_001	Banana	cytosol	44.0	43.31
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	44.8	42.59
GSMUA_AchrUn_...	Banana	extracellular	30.0	38.46
GSMUA_Achr4P20780_001	Banana	extracellular	29.6	37.76
GSMUA_Achr11P...	Banana	extracellular	29.6	37.76
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	28.8	36.36
GSMUA_Achr8P18910_001	Banana	extracellular	28.0	35.71
GSMUA_Achr1P00370_001	Banana	extracellular	26.8	35.26
GSMUA_Achr5P12400_001	Banana	extracellular	26.8	35.26
GSMUA_Achr8P11540_001	Banana	extracellular	26.8	35.26
GSMUA_AchrUn_...	Banana	extracellular	26.8	35.26
GSMUA_Achr8P33980_001	Banana	extracellular	28.0	35.18
GSMUA_AchrUn_...	Banana	extracellular	26.4	34.74
GSMUA_AchrUn_...	Banana	extracellular	26.0	34.21
GSMUA_Achr2P03980_001	Banana	extracellular	26.0	34.21
GSMUA_Achr5P11480_001	Banana	plasma membrane	26.8	33.84
GSMUA_Achr8P33990_001	Banana	extracellular	26.0	32.83
GSMUA_Achr11P...	Banana	extracellular	27.6	32.24
GSMUA_Achr10P...	Banana	plasma membrane	27.6	32.24
GSMUA_Achr1P07460_001	Banana	extracellular	21.6	30.86
GSMUA_Achr1P02360_001	Banana	unclear	33.6	29.79
GSMUA_Achr2P11190_001	Banana	plasma membrane	32.4	28.83
GSMUA_Achr1P26380_001	Banana	plasma membrane	32.0	28.47

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr11G02240_001	EnsemblPlants:GSMUA_Achr11P02240_001	EnsemblPlants:GSMUA_Achr11T02240_001	InterPro:IPR023271	UniProt:M0RNQ4
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295CEDE	SEG:seg

Description

Probable aquaporin TIP1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02240_001]

Coordinates

chr11:-:1541891..1543020

Molecular Weight (calculated)

25828.4 Da

IEP (calculated)

5.437

GRAVY (calculated)

0.800

Length

250 amino acids

Sequence
(BLAST)

001: MPITQIAIGT TAEATHPTAL KAALAEFICT FIFVFAGQGS GMAYNKLTSD GAATPEGLIA AALAHGFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSTVACLL LRFSTGGLET GTFGLTGVSV WEALVLEIVM TFGLVYTVYA TAVDPKKGSL GTIAPIAIGF IVGANILVGG PFDGASMNPA
201: VSFGPALVSW SWTHQWVYWL GPLIGGALAG IVYEIFFISH SHEQLPTADY

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.