Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX72962
CDX96453
CDY11123
CDY48045
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36830.1 CDX68239 AT1G73190.1 21798944
AT2G36830.1 CDX72962 AT1G73190.1 21798944
AT2G36830.1 CDX96453 AT1G73190.1 21798944
AT2G36830.1 CDY11123 AT1G73190.1 21798944
AT2G36830.1 CDY48045 AT1G73190.1 21798944
AT2G36830.1 CDY66321 AT1G73190.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66645 Canola plastid 85.66 97.29
CDY67380 Canola plastid 85.66 97.29
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 93.23 93.23
CDX83623 Canola golgi, plasma membrane, plastid 88.84 88.14
CDY13639 Canola plasma membrane 88.84 88.14
PGSC0003DMT400072432 Potato cytosol 84.06 85.08
CDY28539 Canola plasma membrane 85.66 84.98
CDY48983 Canola plasma membrane 85.66 84.98
Solyc10g083880.1.1 Tomato plastid 83.27 84.27
VIT_08s0007g04780.t01 Wine grape cytosol 84.06 84.06
KRH67767 Soybean mitochondrion 82.07 82.4
KRG96046 Soybean nucleus 82.07 82.4
Os03t0146100-01 Rice nucleus 80.88 81.2
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 79.28 79.6
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 79.28 79.6
EER92857 Sorghum cytosol 78.88 79.2
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 78.88 79.2
Zm00001d027652_P001 Maize plasma membrane 77.29 77.6
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 76.89 76.89
TraesCS4B01G310900.1 Wheat unclear 76.49 76.8
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 76.49 76.8
HORVU4Hr1G079230.1 Barley vacuole 76.1 76.4
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 72.51 72.51
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 72.91 71.21
CDY69446 Canola cytosol 71.31 71.03
CDY07142 Canola cytosol 71.31 71.03
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 52.59 62.86
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 62.15 62.4
CDX82410 Canola plasma membrane 61.75 62.25
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 62.15 62.15
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 61.75 62.0
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 61.75 61.75
CDY51678 Canola plasma membrane, vacuole 61.35 61.6
CDX97733 Canola endoplasmic reticulum, extracellular 60.56 61.29
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 60.16 60.64
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 60.16 60.64
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 59.76 60.48
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 58.17 57.71
CDY48045 Canola golgi, mitochondrion, plasma membrane 60.56 57.14
CDY66321 Canola plasma membrane 60.16 56.77
CDX75873 Canola extracellular, golgi, vacuole 61.75 56.36
CDY11123 Canola cytosol 58.96 55.85
CDX72962 Canola plasma membrane 58.96 55.85
CDX68239 Canola cytosol 58.96 55.85
CDX96453 Canola cytosol 58.57 55.47
CDX81850 Canola golgi, mitochondrion, plasma membrane 56.97 53.56
CDY21731 Canola golgi, mitochondrion, plasma membrane 56.57 53.18
CDX77009 Canola cytosol, plasma membrane, vacuole 52.59 53.01
CDY19176 Canola plasma membrane 55.78 52.43
CDY26214 Canola plasma membrane 55.38 52.06
CDY35336 Canola extracellular 28.29 49.65
CDY47413 Canola mitochondrion, plastid 40.64 39.53
CDX99048 Canola mitochondrion, plastid 40.24 39.15
CDY66912 Canola extracellular 28.29 34.47
CDX89115 Canola plasma membrane 29.48 32.89
CDX72515 Canola golgi, plasma membrane 32.67 32.28
CDY09192 Canola plasma membrane 32.67 31.66
CDX88767 Canola plasma membrane 32.67 31.54
CDY31523 Canola plasma membrane 32.67 31.54
CDX71032 Canola plasma membrane 32.67 31.54
CDY70391 Canola extracellular, golgi 19.92 31.45
CDX76314 Canola cytosol 34.66 30.96
CDY52648 Canola plasma membrane 34.66 30.96
CDX69112 Canola plasma membrane 34.66 30.96
CDY46759 Canola plasma membrane 35.06 30.88
CDY17511 Canola plasma membrane 34.26 30.61
CDY53629 Canola cytosol 31.47 30.5
CDX78177 Canola plasma membrane 34.66 30.31
CDY56697 Canola plasma membrane 34.66 30.31
CDY14415 Canola cytosol, peroxisome, plasma membrane 34.66 30.21
CDY07681 Canola plasma membrane 34.66 30.21
CDX91341 Canola plasma membrane 34.26 30.18
CDX78265 Canola plasma membrane 34.26 30.07
CDX73446 Canola peroxisome 34.26 30.07
CDY46758 Canola plasma membrane 33.86 30.04
CDY13298 Canola plasma membrane 34.26 29.97
CDX91340 Canola plasma membrane 33.86 29.82
CDX90046 Canola cytosol, peroxisome, plasma membrane 33.86 29.72
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.47 29.37
CDX91911 Canola cytosol, peroxisome, plasma membrane 33.47 29.17
CDX67611 Canola plasma membrane 33.07 29.02
CDY48920 Canola plasma membrane 33.07 29.02
CDX71738 Canola plasma membrane 33.07 29.02
CDY07519 Canola plasma membrane 33.07 29.02
CDY51161 Canola cytosol, peroxisome, plasma membrane 33.07 29.02
CDX74983 Canola cytosol, peroxisome, plasma membrane 22.71 28.93
CDX74334 Canola cytosol, peroxisome, plasma membrane 33.07 28.82
CDX74777 Canola cytosol, peroxisome, plasma membrane 32.67 28.67
CDY18886 Canola cytosol, peroxisome, plasma membrane 32.67 28.67
CDX83385 Canola cytosol, peroxisome, plasma membrane 32.67 28.67
CDY37078 Canola cytosol, peroxisome, plasma membrane 32.67 28.67
CDY27346 Canola cytosol, peroxisome, plasma membrane 32.67 28.67
CDY10936 Canola plasma membrane 32.67 28.57
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.27 28.32
CDY38017 Canola plasma membrane 32.27 28.32
CDX94185 Canola plasma membrane 31.47 27.53
CDX74984 Canola cytosol, peroxisome, plasma membrane 33.86 27.42
CDY15165 Canola plastid 33.07 25.62
CDY66913 Canola cytosol, mitochondrion, nucleus 1.2 6.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078IQ62UniProt:A0A078IQ62InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY53270ProteinID:CDY53270ProteinID:CDY53270.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00010298001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelixUniParc:UPI0004EE030E
Description
BnaCnng24720DBnaCnng24720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ62]
Coordinates
chrLK033181:+:36071..37764
Molecular Weight (calculated)
25587.1 Da
IEP (calculated)
6.075
GRAVY (calculated)
0.810
Length
251 amino acids
Sequence
(BLAST)
001: MPIRNIAVGR ADEATRPDAL KAALAEFIST MIFVFAGSGS GMAFNKLTEN GGTTPSGLVA AALAHAFGLF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSVVACLL LKFATGGLVV PAFGLSAGVG VSNALVFEIV MTFGLVYTVY ATAVDPKNGS LGTIAPIAIG FIVGADILAG GAFSGASMNP
201: AVAFGPAVVS WSWNNHWVYW AGPLIGGGVA GLIYEVFFIN TTHEQLPTTD Y
Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.