Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX70995
CDX72962
CDX78905
CDX88803
CDX92368
CDX96453
CDX97739
CDX98596
CDX99411
CDY01565
CDY09128
CDY11123
CDY30157
CDY35676
CDY48045
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73190.1 CDX68239 AT1G73190.1 23163742
AT1G73190.1 CDX72962 AT1G73190.1 23163742
AT1G73190.1 CDX96453 AT1G73190.1 23163742
AT1G73190.1 CDY11123 AT1G73190.1 23163742
AT1G73190.1 CDY48045 AT1G73190.1 23163742
AT1G73190.1 CDY66321 AT1G73190.1 23163742
AT1G73190.1 CDX97739 AT3G16310.1 21798944
AT1G73190.1 CDY30157 AT3G16310.1 21798944
AT1G73190.1 CDX78905 AT4G19030.1 21798944
AT1G73190.1 CDX98596 AT4G19030.1 21798944
AT1G73190.1 CDX99411 AT4G19030.1 21798944
AT1G73190.1 CDY01565 AT4G19030.1 21798944
AT1G73190.1 CDX70995 AT5G22290.1 21798944
AT1G73190.1 CDX88803 AT5G22290.1 21798944
AT1G73190.1 CDX92368 AT5G22290.1 21798944
AT1G73190.1 CDY09128 AT5G22290.1 21798944
AT1G73190.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96453 Canola cytosol 98.87 98.87
Bra016014.1-P Field mustard cytosol 98.49 98.49
CDX68239 Canola cytosol 92.08 92.08
CDY11123 Canola cytosol 92.08 92.08
CDY48045 Canola golgi, mitochondrion, plasma membrane 91.7 91.35
CDY66321 Canola plasma membrane 91.7 91.35
AT1G73190.1 Thale cress plasma membrane 90.94 89.93
CDX81850 Canola golgi, mitochondrion, plasma membrane 83.02 82.4
CDY21731 Canola golgi, mitochondrion, plasma membrane 82.64 82.02
CDY19176 Canola plasma membrane 82.26 81.65
CDY26214 Canola plasma membrane 81.89 81.27
VIT_16s0039g00220.t01 Wine grape cytosol 70.19 71.81
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 69.06 71.76
KRH38823 Soybean nucleus 68.3 70.98
Solyc06g072130.2.1 Tomato extracellular 69.06 70.66
PGSC0003DMT400069330 Potato cytosol 68.3 69.88
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 66.42 69.29
KRH34280 Soybean endoplasmic reticulum 66.42 69.29
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 65.66 68.5
KRG92517 Soybean cytosol 64.53 67.32
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 65.28 66.54
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 64.91 66.15
HORVU1Hr1G043890.2 Barley mitochondrion 64.53 65.02
TraesCS1D01G175200.1 Wheat unclear 64.53 65.02
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 64.15 64.64
TraesCS1B01G182200.1 Wheat golgi 64.15 64.64
Os10t0492600-01 Rice plastid 62.26 62.5
Zm00001d013956_P003 Maize plasma membrane 61.51 62.21
Zm00001d032610_P003 Maize mitochondrion, plastid 61.89 61.65
EER94020 Sorghum golgi, mitochondrion, plasma membrane 61.13 60.9
CDY66645 Canola plastid 49.81 59.73
CDY67380 Canola plastid 49.81 59.73
CDY28539 Canola plasma membrane 56.6 59.29
CDY48983 Canola plasma membrane 56.6 59.29
CDY53270 Canola plasma membrane 55.85 58.96
CDX83623 Canola golgi, plasma membrane, plastid 56.23 58.89
CDY13639 Canola plasma membrane 56.23 58.89
CDY07142 Canola cytosol 55.47 58.33
CDY69446 Canola cytosol 55.47 58.33
Os04t0527900-01 Rice plastid 54.72 54.72
CDX97733 Canola endoplasmic reticulum, extracellular 50.19 53.63
CDX82410 Canola plasma membrane 50.19 53.41
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 50.19 53.41
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 50.19 53.41
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 49.81 53.23
TraesCS2A01G374400.1 Wheat plasma membrane 53.21 53.21
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 53.21 53.21
TraesCS2D01G370800.1 Wheat plasma membrane 53.21 53.21
Zm00001d002952_P001 Maize plasma membrane 53.21 53.21
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 50.19 53.2
CDY35336 Canola extracellular 28.68 53.15
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 49.81 52.8
EES11105 Sorghum mitochondrion, plasma membrane 53.21 52.61
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 41.51 52.38
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 49.81 52.17
CDX77009 Canola cytosol, plasma membrane, vacuole 48.68 51.81
CDY51678 Canola plasma membrane, vacuole 47.92 50.8
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 47.17 49.8
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 46.79 49.4
CDX75873 Canola extracellular, golgi, vacuole 50.57 48.73
EER95659 Sorghum mitochondrion 47.55 46.49
CDX99048 Canola mitochondrion, plastid 38.11 39.15
CDY47413 Canola mitochondrion, plastid 37.36 38.37
CDY66912 Canola extracellular 28.68 36.89
CDY70391 Canola extracellular, golgi 21.89 36.48
Zm00001d048520_P014 Maize mitochondrion 36.23 35.82
CDX89115 Canola plasma membrane 29.43 34.67
CDX72515 Canola golgi, plasma membrane 30.19 31.5
CDX78177 Canola plasma membrane 33.96 31.36
CDY56697 Canola plasma membrane 33.96 31.36
CDY09192 Canola plasma membrane 30.57 31.27
CDY31523 Canola plasma membrane 30.57 31.15
CDX95670 Canola cytosol, peroxisome, plasma membrane 33.58 31.12
CDY51161 Canola cytosol, peroxisome, plasma membrane 33.58 31.12
CDX74334 Canola cytosol, peroxisome, plasma membrane 33.58 30.9
CDX71738 Canola plasma membrane 33.21 30.77
CDX74777 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDX83385 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDX88767 Canola plasma membrane 30.19 30.77
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDY18886 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDY27346 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDY37078 Canola cytosol, peroxisome, plasma membrane 33.21 30.77
CDY48920 Canola plasma membrane 33.21 30.77
CDY46758 Canola plasma membrane 32.83 30.74
CDY13298 Canola plasma membrane 33.21 30.66
CDY17511 Canola plasma membrane 32.45 30.61
CDX91911 Canola cytosol, peroxisome, plasma membrane 33.21 30.56
CDX91340 Canola plasma membrane 32.83 30.53
CDX91341 Canola plasma membrane 32.83 30.53
CDY46759 Canola plasma membrane 32.83 30.53
CDX90046 Canola cytosol, peroxisome, plasma membrane 32.83 30.42
CDY38017 Canola plasma membrane 32.83 30.42
CDX71032 Canola plasma membrane 29.81 30.38
CDX69112 Canola plasma membrane 32.08 30.25
CDX76314 Canola cytosol 32.08 30.25
CDY52648 Canola plasma membrane 32.08 30.25
CDY53629 Canola cytosol 29.43 30.12
CDX94185 Canola plasma membrane 32.45 29.97
CDY10936 Canola plasma membrane 32.45 29.97
CDX67611 Canola plasma membrane 32.08 29.72
CDY07519 Canola plasma membrane 32.08 29.72
CDX78265 Canola plasma membrane 31.7 29.37
CDY07681 Canola plasma membrane 31.7 29.17
CDX73446 Canola peroxisome 31.32 29.02
CDY14415 Canola cytosol, peroxisome, plasma membrane 31.32 28.82
CDX74983 Canola cytosol, peroxisome, plasma membrane 21.13 28.43
CDX74984 Canola cytosol, peroxisome, plasma membrane 32.83 28.06
CDY15165 Canola plastid 33.21 27.16
CDY66913 Canola cytosol, mitochondrion, nucleus 0.75 4.35
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078C7X0InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX72962
ProteinID:CDX72962ProteinID:CDX72962.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00103389001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF30SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0004EF3474SEG:seg
Description
BnaC06g34100D
Coordinates
chrLK031797:+:1376802..1377962
Molecular Weight (calculated)
27940.1 Da
IEP (calculated)
6.863
GRAVY (calculated)
0.674
Length
265 amino acids
Sequence
(BLAST)
001: MAASTVRTYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWDHAAHVGT NTPGGLVLVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LIGGRISAIL AIYYWIAQLL GAILACLLLR LATNGMRPVG FSLASGVKAH NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIGPLAVGLI VGANILMGGP
201: FSGASMNPAR AFGPALVGWR WDDHWIYWVG PFIGGALAAF IYEFMVIPTE PPAHHTHQPL APEDY
Best Arabidopsis Sequence Match ( AT1G73190.1 )
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.