Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39010.1 | CDX94185 | AT4G23400.1 | 21798944 |
| AT2G39010.1 | CDY10936 | AT4G23400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000111.1-P | Field mustard | plasma membrane | 98.96 | 98.96 |
| CDY07681 | Canola | plasma membrane | 98.96 | 98.96 |
| AT2G39010.1 | Thale cress | plasma membrane | 93.4 | 93.08 |
| CDY70391 | Canola | extracellular, golgi | 44.1 | 79.87 |
| PGSC0003DMT400062174 | Potato | plasma membrane | 75.69 | 76.22 |
| Solyc06g011350.2.1 | Tomato | nucleus | 73.96 | 76.07 |
| CDY46758 | Canola | plasma membrane | 74.65 | 75.97 |
| CDX91340 | Canola | plasma membrane | 75.0 | 75.79 |
| CDY56697 | Canola | plasma membrane | 75.35 | 75.61 |
| CDX78177 | Canola | plasma membrane | 75.35 | 75.61 |
| CDX73446 | Canola | peroxisome | 75.0 | 75.52 |
| CDY07519 | Canola | plasma membrane | 75.0 | 75.52 |
| CDX67611 | Canola | plasma membrane | 75.0 | 75.52 |
| CDX78265 | Canola | plasma membrane | 75.0 | 75.52 |
| CDY52648 | Canola | plasma membrane | 73.61 | 75.44 |
| CDX69112 | Canola | plasma membrane | 73.61 | 75.44 |
| CDY09192 | Canola | plasma membrane | 67.71 | 75.29 |
| CDX72515 | Canola | golgi, plasma membrane | 66.32 | 75.2 |
| CDX88767 | Canola | plasma membrane | 67.71 | 75.0 |
| CDX71032 | Canola | plasma membrane | 67.71 | 75.0 |
| CDY17511 | Canola | plasma membrane | 72.92 | 74.73 |
| CDX76314 | Canola | cytosol | 72.92 | 74.73 |
| CDY46759 | Canola | plasma membrane | 73.61 | 74.39 |
| CDX91341 | Canola | plasma membrane | 73.61 | 74.39 |
| CDY13298 | Canola | plasma membrane | 73.61 | 73.87 |
| PGSC0003DMT400020870 | Potato | plasma membrane | 73.61 | 73.87 |
| Solyc11g069430.1.1 | Tomato | plastid | 73.61 | 73.87 |
| CDY66912 | Canola | extracellular | 52.78 | 73.79 |
| CDY31523 | Canola | plasma membrane | 66.32 | 73.46 |
| CDY53629 | Canola | cytosol | 65.62 | 72.97 |
| CDX74983 | Canola | cytosol, peroxisome, plasma membrane | 49.65 | 72.59 |
| CDX89115 | Canola | plasma membrane | 54.86 | 70.22 |
| CDX74984 | Canola | cytosol, peroxisome, plasma membrane | 75.0 | 69.68 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDX71738 | Canola | plasma membrane | 65.62 | 66.08 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDY38017 | Canola | plasma membrane | 65.62 | 66.08 |
| CDX90046 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 65.62 | 66.08 |
| CDY51161 | Canola | cytosol, peroxisome, plasma membrane | 65.28 | 65.73 |
| CDY48920 | Canola | plasma membrane | 65.28 | 65.73 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 65.28 | 65.73 |
| CDY10936 | Canola | plasma membrane | 65.28 | 65.51 |
| CDY07221 | Canola | cytosol, peroxisome, plasma membrane | 64.93 | 65.38 |
| CDX74334 | Canola | cytosol, peroxisome, plasma membrane | 65.28 | 65.28 |
| CDX91911 | Canola | cytosol, peroxisome, plasma membrane | 65.28 | 65.28 |
| CDX94185 | Canola | plasma membrane | 64.93 | 65.16 |
| CDY15165 | Canola | plastid | 64.93 | 57.72 |
| CDX97733 | Canola | endoplasmic reticulum, extracellular | 32.99 | 38.31 |
| CDY30146 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.99 | 38.31 |
| CDY63821 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.99 | 38.15 |
| CDY20190 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.99 | 38.15 |
| CDX82410 | Canola | plasma membrane | 32.64 | 37.75 |
| CDY47816 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.29 | 36.76 |
| CDY67380 | Canola | plastid | 28.12 | 36.65 |
| CDY66645 | Canola | plastid | 28.12 | 36.65 |
| CDY59296 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.6 | 36.26 |
| CDY07142 | Canola | cytosol | 31.6 | 36.11 |
| CDY69446 | Canola | cytosol | 31.6 | 36.11 |
| CDX83623 | Canola | golgi, plasma membrane, plastid | 31.6 | 35.97 |
| CDY13639 | Canola | plasma membrane | 31.6 | 35.97 |
| CDX77768 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.25 | 35.86 |
| CDY28932 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.04 | 35.71 |
| CDY65121 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.9 | 35.6 |
| CDY64499 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.9 | 35.6 |
| CDY51678 | Canola | plasma membrane, vacuole | 30.9 | 35.6 |
| CDY48983 | Canola | plasma membrane | 30.9 | 35.18 |
| CDY28539 | Canola | plasma membrane | 30.9 | 35.18 |
| CDY53270 | Canola | plasma membrane | 30.21 | 34.66 |
| CDX75873 | Canola | extracellular, golgi, vacuole | 32.64 | 34.18 |
| CDY66321 | Canola | plasma membrane | 31.25 | 33.83 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 30.56 | 33.08 |
| CDX68239 | Canola | cytosol | 29.51 | 32.08 |
| CDY11123 | Canola | cytosol | 29.51 | 32.08 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 27.43 | 31.73 |
| CDX96453 | Canola | cytosol | 29.17 | 31.7 |
| CDY35336 | Canola | extracellular | 15.62 | 31.47 |
| CDX72962 | Canola | plasma membrane | 28.82 | 31.32 |
| CDY26214 | Canola | plasma membrane | 28.82 | 31.09 |
| CDY19176 | Canola | plasma membrane | 28.82 | 31.09 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 27.78 | 29.96 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 27.78 | 29.96 |
| CDY47413 | Canola | mitochondrion, plastid | 25.35 | 28.29 |
| CDX99048 | Canola | mitochondrion, plastid | 25.0 | 27.91 |
| CDY66913 | Canola | cytosol, mitochondrion, nucleus | 4.17 | 26.09 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | GO:A0A078FIZ5 | UniProt:A0A078FIZ5 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| EnsemblPlants:CDY14415 | ProteinID:CDY14415 | ProteinID:CDY14415.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| EnsemblPlantsGene:GSBRNA2T00079074001 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 |
| ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF167 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| UniParc:UPI0004EAB750 | SEG:seg | : | : | : | : |
Description
BnaC03g21800DBnaC03g21800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIZ5]
Coordinates
chrLK032043:-:147022..151127
Molecular Weight (calculated)
30911.6 Da
IEP (calculated)
8.564
GRAVY (calculated)
0.473
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTELTEEES LSGKDYQDPP RVKIFEAREL GKWSFYRAVI AEFIATLLFL YITVLTVIGF KSQTDLQTGG GACASVGLLG ISWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLASKVSL VRAISYIVAQ CLGATCGVGL VKVFQKTYYN RYGGGANVLA DGYNVGVGVG AEIIGTFVLV YTVFSATDPK RNARDSHIPV
201: LAPLPIGFSV FMVHLATIPI TGTGINPARS FGAAVIYNNQ KAWDDQWIFW VGPFVGASIA ALYHQFVLRA GAMKAYGSVR SQLHELHA
101: GGHINPAVTF GLFLASKVSL VRAISYIVAQ CLGATCGVGL VKVFQKTYYN RYGGGANVLA DGYNVGVGVG AEIIGTFVLV YTVFSATDPK RNARDSHIPV
201: LAPLPIGFSV FMVHLATIPI TGTGINPARS FGAAVIYNNQ KAWDDQWIFW VGPFVGASIA ALYHQFVLRA GAMKAYGSVR SQLHELHA
001: MTKDELTEEE SLSGKDYLDP PPVKTFEVRE LKKWSFYRAV IAEFIATLLF LYVTVLTVIG FKSQTDINAG GGACASVGLL GISWAFGGMI FILVYCTAGI
101: SGGHINPAVT FGLFLASKVS LVRAVSYMVA QCLGATCGVG LVKVFQSTYY NRYGGGANML SDGYNVGVGV GAEIIGTFVL VYTVFSATDP KRNARDSHIP
201: VLAPLPIGFS VFMVHLATIP ITGTGINPAR SFGAAVIYNN QKAWDDQWIF WVGPFVGAAI AAFYHQFVLR AGAMKAYGSV RSQLHELHA
101: SGGHINPAVT FGLFLASKVS LVRAVSYMVA QCLGATCGVG LVKVFQSTYY NRYGGGANML SDGYNVGVGV GAEIIGTFVL VYTVFSATDP KRNARDSHIP
201: VLAPLPIGFS VFMVHLATIP ITGTGINPAR SFGAAVIYNN QKAWDDQWIF WVGPFVGAAI AAFYHQFVLR AGAMKAYGSV RSQLHELHA
Arabidopsis Description
PIP2-6Probable aquaporin PIP2-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV07]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.