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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • plasma membrane 3
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX70995
CDX72962
CDX78905
CDX88803
CDX92368
CDX96453
CDX97739
CDX98596
CDX99411
CDY01565
CDY09128
CDY11123
CDY30157
CDY35676
CDY48045
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73190.1 CDX68239 AT1G73190.1 23163742
AT1G73190.1 CDX72962 AT1G73190.1 23163742
AT1G73190.1 CDX96453 AT1G73190.1 23163742
AT1G73190.1 CDY11123 AT1G73190.1 23163742
AT1G73190.1 CDY48045 AT1G73190.1 23163742
AT1G73190.1 CDY66321 AT1G73190.1 23163742
AT1G73190.1 CDX97739 AT3G16310.1 21798944
AT1G73190.1 CDY30157 AT3G16310.1 21798944
AT1G73190.1 CDX78905 AT4G19030.1 21798944
AT1G73190.1 CDX98596 AT4G19030.1 21798944
AT1G73190.1 CDX99411 AT4G19030.1 21798944
AT1G73190.1 CDY01565 AT4G19030.1 21798944
AT1G73190.1 CDX70995 AT5G22290.1 21798944
AT1G73190.1 CDX88803 AT5G22290.1 21798944
AT1G73190.1 CDX92368 AT5G22290.1 21798944
AT1G73190.1 CDY09128 AT5G22290.1 21798944
AT1G73190.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48045 Canola golgi, mitochondrion, plasma membrane 97.37 97.37
CDX68239 Canola cytosol 94.36 94.72
CDY11123 Canola cytosol 94.36 94.72
AT1G73190.1 Thale cress plasma membrane 93.98 93.28
CDX72962 Canola plasma membrane 91.35 91.7
CDX96453 Canola cytosol 91.35 91.7
CDX81850 Canola golgi, mitochondrion, plasma membrane 84.59 84.27
CDY19176 Canola plasma membrane 84.21 83.9
CDY21731 Canola golgi, mitochondrion, plasma membrane 84.21 83.9
CDY26214 Canola plasma membrane 83.83 83.52
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 71.8 74.9
KRH38823 Soybean nucleus 71.05 74.12
Solyc06g072130.2.1 Tomato extracellular 70.68 72.59
VIT_16s0039g00220.t01 Wine grape cytosol 70.3 72.2
PGSC0003DMT400069330 Potato cytosol 69.92 71.81
KRH34280 Soybean endoplasmic reticulum 68.05 71.26
KRG92517 Soybean cytosol 66.17 69.29
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 65.04 68.11
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 65.04 68.11
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 65.79 67.31
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 65.41 66.92
HORVU1Hr1G043890.2 Barley mitochondrion 64.29 65.02
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 64.29 65.02
TraesCS1D01G175200.1 Wheat unclear 64.29 65.02
TraesCS1B01G182200.1 Wheat golgi 63.91 64.64
Os10t0492600-01 Rice plastid 63.91 64.39
Zm00001d013956_P003 Maize plasma membrane 62.03 62.98
Zm00001d032610_P003 Maize mitochondrion, plastid 62.41 62.41
EER94020 Sorghum golgi, mitochondrion, plasma membrane 61.28 61.28
CDY66645 Canola plastid 50.75 61.09
CDY67380 Canola plastid 50.75 61.09
CDY53270 Canola plasma membrane 56.77 60.16
CDY28539 Canola plasma membrane 56.77 59.68
CDY48983 Canola plasma membrane 56.77 59.68
CDX83623 Canola golgi, plasma membrane, plastid 56.39 59.29
CDY13639 Canola plasma membrane 56.39 59.29
CDY07142 Canola cytosol 56.02 59.13
CDY69446 Canola cytosol 56.02 59.13
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 51.5 55.02
CDX82410 Canola plasma membrane 51.13 54.62
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 51.13 54.62
CDX97733 Canola endoplasmic reticulum, extracellular 50.75 54.44
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 51.13 54.4
Os04t0527900-01 Rice plastid 54.14 54.34
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 50.38 54.03
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 50.75 54.0
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 42.48 53.81
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 50.75 53.36
TraesCS2A01G374400.1 Wheat plasma membrane 53.01 53.21
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 53.01 53.21
TraesCS2D01G370800.1 Wheat plasma membrane 53.01 53.21
Zm00001d002952_P001 Maize plasma membrane 53.01 53.21
CDY35336 Canola extracellular 28.57 53.15
EES11105 Sorghum mitochondrion, plasma membrane 53.38 52.99
CDY51678 Canola plasma membrane, vacuole 48.87 52.0
CDX77009 Canola cytosol, plasma membrane, vacuole 48.5 51.81
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 48.12 51.0
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 47.74 50.6
CDX75873 Canola extracellular, golgi, vacuole 51.88 50.18
EER95659 Sorghum mitochondrion 46.99 46.13
CDY66912 Canola extracellular 30.45 39.32
CDX99048 Canola mitochondrion, plastid 37.97 39.15
CDY47413 Canola mitochondrion, plastid 37.97 39.15
CDY70391 Canola extracellular, golgi 22.56 37.74
CDX89115 Canola plasma membrane 31.2 36.89
Zm00001d048520_P014 Maize mitochondrion 36.47 36.19
CDY09192 Canola plasma membrane 33.08 33.98
CDY31523 Canola plasma membrane 33.08 33.85
CDX72515 Canola golgi, plasma membrane 31.95 33.46
CDX88767 Canola plasma membrane 32.71 33.46
CDX78177 Canola plasma membrane 35.71 33.1
CDY56697 Canola plasma membrane 35.71 33.1
CDX71032 Canola plasma membrane 32.33 33.08
CDX95670 Canola cytosol, peroxisome, plasma membrane 35.34 32.87
CDY51161 Canola cytosol, peroxisome, plasma membrane 35.34 32.87
CDY53629 Canola cytosol 31.95 32.82
CDY13298 Canola plasma membrane 35.34 32.75
CDX74334 Canola cytosol, peroxisome, plasma membrane 35.34 32.64
CDX71738 Canola plasma membrane 34.96 32.52
CDX74777 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDX83385 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDY07221 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDY18886 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDY27346 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDY37078 Canola cytosol, peroxisome, plasma membrane 34.96 32.52
CDY48920 Canola plasma membrane 34.96 32.52
CDY46758 Canola plasma membrane 34.59 32.51
CDY17511 Canola plasma membrane 34.21 32.38
CDX91911 Canola cytosol, peroxisome, plasma membrane 34.96 32.29
CDX91340 Canola plasma membrane 34.59 32.28
CDX91341 Canola plasma membrane 34.59 32.28
CDY46759 Canola plasma membrane 34.59 32.28
CDX90046 Canola cytosol, peroxisome, plasma membrane 34.59 32.17
CDY38017 Canola plasma membrane 34.59 32.17
CDX69112 Canola plasma membrane 33.83 32.03
CDX76314 Canola cytosol 33.83 32.03
CDY52648 Canola plasma membrane 33.83 32.03
CDX94185 Canola plasma membrane 34.21 31.71
CDY10936 Canola plasma membrane 34.21 31.71
CDY07681 Canola plasma membrane 34.21 31.6
CDY14415 Canola cytosol, peroxisome, plasma membrane 33.83 31.25
CDX67611 Canola plasma membrane 33.08 30.77
CDY07519 Canola plasma membrane 33.08 30.77
CDX74983 Canola cytosol, peroxisome, plasma membrane 22.56 30.46
CDX78265 Canola plasma membrane 32.71 30.42
CDX73446 Canola peroxisome 32.33 30.07
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.59 29.68
CDY15165 Canola plastid 34.96 28.7
CDY66913 Canola cytosol, mitochondrion, nucleus 0.75 4.35
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078JKJ4UniProt:A0A078JKJ4InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY66321ProteinID:CDY66321ProteinID:CDY66321.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00053362001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF30SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0004EE9341SEG:seg::::
Description
BnaCnng50290DBnaCnng50290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKJ4]
Coordinates
chrLK035192:-:12420..13417
Molecular Weight (calculated)
28034.1 Da
IEP (calculated)
7.292
GRAVY (calculated)
0.558
Length
266 amino acids
Sequence
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWDRAAHAGT DTPGGLVLVA LAHAFALFAA VSAAANVSGG HVNPAVTFGA
101: LIGGRLSAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAG NGLVLEIILT FGLVYVVYST MIDPKRGSLG VIGPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WDDHWIYWVG PFIGGALAAL IYEYMVIPTE PPTQHTHHQP LAPEDY
Best Arabidopsis Sequence Match ( AT1G73190.1 )
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.