Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
plastid: 27992503 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os04t0527900-01 | |
| Os05t0520100-00 | |
| Os10t0492600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73190.1 | Os04t0527900-01 | AT1G73190.1 | 23163742 |
| AT1G73190.1 | Os10t0492600-01 | AT1G73190.1 | 23163742 |
| AT1G73190.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT1G73190.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013956_P003 | Maize | plasma membrane | 90.53 | 91.22 |
| TraesCS1D01G175200.1 | Wheat | unclear | 88.26 | 88.59 |
| TraesCS1A01G165400.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 88.26 | 88.59 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 88.26 | 88.59 |
| TraesCS1B01G182200.1 | Wheat | golgi | 87.88 | 88.21 |
| EER94020 | Sorghum | golgi, mitochondrion, plasma membrane | 88.64 | 87.97 |
| Zm00001d032610_P003 | Maize | mitochondrion, plastid | 86.36 | 85.71 |
| GSMUA_Achr4P26010_001 | Banana | cytosol, golgi, plasma membrane | 74.24 | 77.17 |
| GSMUA_Achr2P10640_001 | Banana | cytosol, golgi, plasma membrane | 72.35 | 75.2 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 64.39 | 65.64 |
| CDY66321 | Canola | plasma membrane | 64.39 | 63.91 |
| CDX68239 | Canola | cytosol | 63.26 | 63.02 |
| CDY11123 | Canola | cytosol | 63.26 | 63.02 |
| Bra008079.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 62.88 | 62.41 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 62.88 | 62.41 |
| AT1G73190.1 | Thale cress | plasma membrane | 63.26 | 62.31 |
| CDX96453 | Canola | cytosol | 62.5 | 62.26 |
| Bra016014.1-P | Field mustard | cytosol | 62.5 | 62.26 |
| CDX72962 | Canola | plasma membrane | 62.5 | 62.26 |
| KRH34280 | Soybean | endoplasmic reticulum | 59.47 | 61.81 |
| CDY19176 | Canola | plasma membrane | 62.5 | 61.8 |
| Bra025947.1-P | Field mustard | cytosol, golgi, plasma membrane | 62.5 | 61.8 |
| Solyc06g072130.2.1 | Tomato | extracellular | 60.61 | 61.78 |
| PGSC0003DMT400069330 | Potato | cytosol | 60.61 | 61.78 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 59.47 | 61.57 |
| CDY26214 | Canola | plasma membrane | 62.12 | 61.42 |
| KRH38823 | Soybean | nucleus | 59.09 | 61.18 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 61.74 | 61.05 |
| KRG92517 | Soybean | cytosol | 58.71 | 61.02 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 61.36 | 60.67 |
| Bra031005.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 61.36 | 60.67 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 61.36 | 60.67 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 59.47 | 60.38 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 59.09 | 60.0 |
| Os04t0527900-01 | Rice | plastid | 57.95 | 57.74 |
| Os03t0146100-01 | Rice | nucleus | 52.65 | 55.6 |
| Os02t0658100-01 | Rice | vacuole | 40.53 | 51.94 |
| Os06t0336200-01 | Rice | nucleus | 45.08 | 47.98 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 45.45 | 47.81 |
| Os04t0550900-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 23.48 | 43.66 |
| Os01t0232100-01 | Rice | cytosol, endoplasmic reticulum, extracellular | 40.53 | 41.8 |
| Os04t0550800-01 | Rice | endoplasmic reticulum, plasma membrane | 34.09 | 33.46 |
| Os03t0861300-01 | Rice | cytosol, peroxisome, plasma membrane | 34.09 | 32.14 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 36.74 | 30.89 |
| Os07t0448400-01 | Rice | plasma membrane | 15.53 | 30.37 |
| Os04t0233400-01 | Rice | plasma membrane | 31.82 | 29.79 |
| Os07t0448100-01 | Rice | plasma membrane | 32.2 | 29.72 |
| Os07t0448800-01 | Rice | plasma membrane | 32.2 | 29.31 |
| Os02t0666200-01 | Rice | plasma membrane | 31.44 | 28.72 |
| Os04t0559700-01 | Rice | plasma membrane | 30.68 | 28.12 |
| Os02t0629200-02 | Rice | plasma membrane | 30.3 | 27.78 |
| Os04t0521100-01 | Rice | plasma membrane | 30.3 | 27.59 |
| Os07t0448200-00 | Rice | mitochondrion, nucleus, plastid | 28.03 | 26.71 |
| Os09t0541000-01 | Rice | cytosol, plasma membrane, vacuole | 29.17 | 26.55 |
| Os10t0481100-01 | Rice | plasma membrane | 7.58 | 21.51 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | EntrezGene:4348981 | ProteinID:AAG13544.1 | ProteinID:AAP54406.1 | EMBL:AB114828 |
| EMBL:AK111931 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | ProteinID:BAF26847.1 | ProteinID:BAT11442.1 | ProteinID:EAZ16527.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS |
| EnsemblPlantsGene:Os10g0492600 | EnsemblPlants:Os10t0492600-01 | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF132 | UniProt:Q9FWV6 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI00000A5954 |
| RefSeq:XP_015614155.1 | SEG:seg | : | : | : | : |
Description
TONOPLAST INTRINSIC PROTEIN 3;1Similar to Tonoplast membrane integral protein ZmTIP3-1. (Os10t0492600-01)
Coordinates
chr10:+:18701151..18702537
Molecular Weight (calculated)
27515.6 Da
IEP (calculated)
8.788
GRAVY (calculated)
0.564
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAAARPGR RFTVGRSEDA THPDTIRAAI SEFLATAIFV FAAEGSILSL GKLYQDMSTP GGLVAVSLAH ALALAVAVAV AVNISGGHVN PAITFGALLG
101: GRLSLIRALF YWLAQLLGAV VATLLLRLTT GGMRPPGFAL ASGVGDWHAV LLEATMTFGL MYAYYATVID PKRGHVGTIA PLAVGFLLGA NMLAGGPFDG
201: AGMNPARVFG PALVGWRWRH HWVYWLGPFV GAGLAGLLYE YLVIPSADAA PHGGAHQPLA PEDY
101: GRLSLIRALF YWLAQLLGAV VATLLLRLTT GGMRPPGFAL ASGVGDWHAV LLEATMTFGL MYAYYATVID PKRGHVGTIA PLAVGFLLGA NMLAGGPFDG
201: AGMNPARVFG PALVGWRWRH HWVYWLGPFV GAGLAGLLYE YLVIPSADAA PHGGAHQPLA PEDY
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
Arabidopsis Description
TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.