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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plasma membrane: 29651780
mitochondrion: 15069638
plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 19502382
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
gfp PMID: 29651780 doi
TTH Chu, TG Hoang, DC Trinh, C Bureau, D Meynard, A Vernet, M Ingouff, NV Do, C Périn, E Guiderdoni, P Gantet, C Maurel, DT Luu
BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France., BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France. luu@supagro.fr., CIRAD, UMR AGAP, 34398, Montpellier, France., IRD, LMI RICE, Agricultural Genetics Institute, Pham Van Dong road, Co Nhue, Tuliem, Hanoï, Vietnam., National key laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, Pham Van Dong, Co Nhue, Tuliem, Hanoi, Vietnam., University of Science and Technology of Hanoi, LMI RICE, 18 Hoang Quoc Viet, Nghia Do, Cau Giay, Hanoi, Vietnam., Université de Montpellier, CIRAD-INRA-Montpellier SupAgro, 34000, Montpellier, France., Université de Montpellier, UMR DIADE, 911 Avenue Agropolis, 34394, Montpellier Cedex 5, France.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os04t0233400-01
Os07t0448800-01
Os09t0529350-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 Os04t0233400-01 AT2G16850.1 21798944
AT1G01620.1 Os07t0448800-01 AT2G37180.1 21798944
AT1G01620.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G00430.1 Os04t0233400-01 AT2G16850.1 21798944
AT4G00430.1 Os07t0448800-01 AT2G37180.1 21798944
AT4G00430.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G00430.1 Os09t0529350-01 AT4G24090.1 21798944
AT4G23400.1 Os07t0448800-01 AT2G37180.1 21798944
AT4G23400.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G23400.1 Os04t0233400-01 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES07484 Sorghum plasma membrane 97.23 97.23
Zm00001d017526_P001 Maize plasma membrane 96.89 96.89
TraesCS6B01G279200.1 Wheat plastid 96.54 96.21
Zm00001d051403_P001 Maize plasma membrane 96.89 95.89
TraesCS6A01G245100.1 Wheat golgi, peroxisome, plasma membrane 96.19 95.86
TraesCS6D01G227500.1 Wheat golgi 96.19 95.86
HORVU6Hr1G064140.1 Barley golgi, peroxisome, plasma membrane 95.85 95.52
Zm00001d002690_P001 Maize plasma membrane 95.16 95.49
EES11257 Sorghum cytosol, peroxisome, plasma membrane 94.81 95.14
Os04t0559700-01 Rice plasma membrane 92.73 93.06
AT4G23400.1 Thale cress plasma membrane 87.2 87.8
CDX89115 Canola plasma membrane 68.17 87.56
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 86.51 87.41
Solyc01g094690.2.1 Tomato nucleus 86.16 87.37
CDY66912 Canola extracellular 61.94 86.89
Solyc03g096290.2.1 Tomato nucleus 85.81 86.71
AT3G61430.1 Thale cress plasma membrane 85.81 86.71
CDX83385 Canola cytosol, peroxisome, plasma membrane 85.81 86.71
CDY10936 Canola plasma membrane 85.81 86.41
CDX95670 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDY18886 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
CDX74777 Canola cytosol, peroxisome, plasma membrane 85.47 86.36
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 85.47 86.06
CDY27346 Canola cytosol, peroxisome, plasma membrane 85.12 86.01
CDY37078 Canola cytosol, peroxisome, plasma membrane 85.12 86.01
CDY38017 Canola plasma membrane 85.12 86.01
CDX71738 Canola plasma membrane 85.12 86.01
CDX94185 Canola plasma membrane 85.12 85.71
CDX90046 Canola cytosol, peroxisome, plasma membrane 84.78 85.66
CDY48920 Canola plasma membrane 84.78 85.66
Solyc12g056220.1.1 Tomato plastid 85.12 85.42
Solyc08g008050.2.1 Tomato peroxisome 84.78 85.37
Solyc08g081190.2.1 Tomato plastid 84.43 85.31
CDY51161 Canola cytosol, peroxisome, plasma membrane 84.08 84.97
CDX74334 Canola cytosol, peroxisome, plasma membrane 84.43 84.72
CDY07221 Canola cytosol, peroxisome, plasma membrane 83.74 84.62
CDX91911 Canola cytosol, peroxisome, plasma membrane 84.08 84.38
CDY66913 Canola cytosol, mitochondrion, nucleus 13.15 82.61
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 75.09 77.5
CDY15165 Canola plastid 85.12 75.93
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 78.55 75.42
KRG97766 Soybean endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 34.95 75.37
Os04t0233400-01 Rice plasma membrane 66.44 68.09
Os07t0448800-01 Rice plasma membrane 66.78 66.55
Os02t0629200-02 Rice plasma membrane 65.74 65.97
Os07t0448400-01 Rice plasma membrane 30.8 65.93
Os07t0448100-01 Rice plasma membrane 65.05 65.73
Os04t0521100-01 Rice plasma membrane 65.74 65.52
PGSC0003DMT400064008 Potato extracellular 23.88 61.61
Os09t0541000-01 Rice cytosol, plasma membrane, vacuole 59.52 59.31
Os03t0861300-01 Rice cytosol, peroxisome, plasma membrane 56.06 57.86
Os07t0448200-00 Rice mitochondrion, nucleus, plastid 54.33 56.68
VIT_18s0001g06480.t01 Wine grape cytosol, extracellular, vacuole 27.34 56.03
VIT_12s0034g00250.t01 Wine grape cytosol, extracellular, plastid 21.11 51.26
Os10t0481100-01 Rice plasma membrane 14.88 46.24
Os02t0658100-01 Rice vacuole 24.22 33.98
Os06t0336200-01 Rice nucleus 28.72 33.47
Os10t0492600-01 Rice plastid 28.72 31.44
Os03t0146100-01 Rice nucleus 26.64 30.8
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 26.64 30.68
Os04t0550800-01 Rice endoplasmic reticulum, plasma membrane 28.03 30.11
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 13.84 28.17
Os04t0527900-01 Rice plastid 25.61 27.92
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 23.53 26.56
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 23.18 21.34
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EntrezGene:4330248EMBL:AB009665EMBL:AJ224327InterPro:Aquaporin-like
InterPro:Aquaporin_transptrUniProt:B7SDI4ProteinID:BAD27775.1ProteinID:BAD28398.1ProteinID:BAF09586.1ProteinID:BAS80186.1
ProteinID:EAZ24111.1EMBL:EU267998GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833GO:GO:0008150GO:GO:0015250
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0034220GO:GO:0055085InterPro:IPR023271
EMBL:JN208223EMBL:KF737329InterPro:MIPInterPro:MIP_CSEnsemblPlantsGene:Os02g0666200EnsemblPlants:Os02t0666200-01
PFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF262UniProt:Q6EU94
SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI000009E535RefSeq:XP_015625393.1SEG:seg
Description
PLASMA MEMBRANE INTRINSIC PROTEIN 1AAquaporin. (Os02t0666200-01);Aquaporin. (Os02t0666200-02)
Coordinates
chr2:+:27044341..27047381
Molecular Weight (calculated)
30761.4 Da
IEP (calculated)
9.060
GRAVY (calculated)
0.374
Length
289 amino acids
Sequence
(BLAST)
001: MEGKEEDVRL GANRYSERQP IGTAAQGAGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE FVATFLFLYI TILTVMGVSK SSSKCATVGI QGIAWSFGGM
101: IFALVYCTAG ISGGHINPAV TFGLFLARKL SLTRAIFYIV MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG LGAEIVGTFI LVYTVFSATD
201: AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAIIYN KDHAWNDHWI FWVGPFVGAA LAAIYHQVII RAIPFKSRS
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.