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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 vacuole: 15069638
plasma membrane: 18557835
vacuole: 18557835
plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0200500-01
Os02t0666200-01
Os04t0233400-01
Os04t0559700-01
Os05t0520100-00
Os07t0448800-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37180.1 Os02t0666200-01 AT1G01620.1 21798944
AT2G37180.1 Os04t0559700-01 AT1G01620.1 21798944
AT2G37180.1 Os04t0233400-01 AT2G16850.1 21798944
AT2G37180.1 Os01t0200500-01 AT3G16310.1 21798944
AT2G37180.1 Os05t0520100-00 AT3G16310.1 21798944
AT2G37180.1 Os07t0448800-01 AT3G54820.1 21798944
AT2G37180.1 Os02t0666200-01 AT3G61430.1 21798944
AT2G37180.1 Os04t0559700-01 AT3G61430.1 21798944
AT2G37180.1 Os02t0666200-01 AT4G23400.1 21798944
AT2G37180.1 Os04t0559700-01 AT4G23400.1 21798944
AT2G37180.1 Os04t0233400-01 AT4G35100.1 21798944
AT3G53420.1 Os07t0448800-01 AT3G53420.1 19258017
AT3G54820.1 Os02t0666200-01 AT1G01620.1 21798944
AT3G54820.1 Os04t0559700-01 AT1G01620.1 21798944
AT3G54820.1 Os04t0233400-01 AT2G16850.1 21798944
AT3G54820.1 Os02t0666200-01 AT3G61430.1 21798944
AT3G54820.1 Os04t0559700-01 AT3G61430.1 21798944
AT3G54820.1 Os02t0666200-01 AT4G00430.1 21798944
AT3G54820.1 Os04t0559700-01 AT4G00430.1 21798944
AT3G54820.1 Os04t0233400-01 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019563_P006 Maize plasma membrane 92.76 92.76
EER98451 Sorghum plasma membrane 92.76 92.76
TraesCS2A01G198500.1 Wheat plasma membrane 91.03 91.03
TraesCS2D01G206300.1 Wheat golgi 90.69 90.69
TraesCS2B01G225900.1 Wheat golgi 90.69 90.69
Zm00001d005421_P001 Maize plasma membrane 89.66 89.04
KRG91899 Soybean plasma membrane 84.14 85.92
VIT_06s0004g02850.t01 Wine grape plasma membrane 82.76 85.71
PGSC0003DMT400053882 Potato extracellular 57.93 85.71
VIT_13s0019g04280.t01 Wine grape plasma membrane 83.1 84.86
CDY70391 Canola extracellular, golgi 46.21 84.28
PGSC0003DMT400053877 Potato plasma membrane 80.69 83.87
KRH70183 Soybean mitochondrion 82.07 83.51
Os02t0629200-02 Rice plasma membrane 82.76 83.33
KRH08523 Soybean plasma membrane 81.72 83.16
KRH08522 Soybean plasma membrane 81.72 83.16
Os07t0448100-01 Rice plasma membrane 81.72 82.87
Os04t0521100-01 Rice plasma membrane 82.76 82.76
Bra005216.1-P Field mustard cytosol, golgi, plasma membrane 65.86 82.68
PGSC0003DMT400027154 Potato plasma membrane 80.0 82.56
Solyc09g007770.2.1 Tomato nucleus 73.45 82.24
CDX78177 Canola plasma membrane 81.38 82.23
Bra006997.1-P Field mustard plasma membrane 81.38 82.23
Solyc10g084120.1.1 Tomato nucleus 79.66 82.21
KRH70184 Soybean plasma membrane 80.69 82.11
CDY46758 Canola plasma membrane 80.0 81.98
Bra023102.1-P Field mustard plasma membrane 80.0 81.98
CDY56697 Canola plasma membrane 81.03 81.88
Bra023103.1-P Field mustard plasma membrane 80.34 81.75
CDX91341 Canola plasma membrane 80.34 81.75
Bra005215.1-P Field mustard cytosol, peroxisome, plasma membrane 66.9 81.51
KRH34875 Soybean plasma membrane 83.1 81.42
CDY46759 Canola plasma membrane 80.0 81.4
CDX91340 Canola plasma membrane 80.0 81.4
CDX74983 Canola cytosol, peroxisome, plasma membrane 55.17 81.22
AT3G53420.1 Thale cress plasma membrane 80.0 80.84
KRH29919 Soybean mitochondrion 79.66 80.77
KRH25011 Soybean mitochondrion 79.66 80.77
AT3G54820.1 Thale cress plasma membrane 79.31 80.42
KRH26410 Soybean golgi, peroxisome, plasma membrane 79.31 80.14
VIT_08s0040g01890.t01 Wine grape plasma membrane 79.31 80.14
CDY13298 Canola plasma membrane 79.31 80.14
AT2G37180.1 Thale cress plasma membrane 78.62 80.0
KRH22889 Soybean golgi, peroxisome, plasma membrane 78.97 79.79
CDY07519 Canola plasma membrane 78.62 79.72
CDX67611 Canola plasma membrane 78.62 79.72
Os04t0233400-01 Rice plasma membrane 77.24 79.43
Bra003196.1-P Field mustard plasma membrane 77.93 79.02
CDX78265 Canola plasma membrane 77.59 78.67
Bra007100.1-P Field mustard plasma membrane 77.59 78.67
Os07t0448400-01 Rice plasma membrane 36.55 78.52
CDX73446 Canola peroxisome 77.24 78.32
KRG95980 Soybean plasma membrane 76.9 78.25
KRH67688 Soybean plasma membrane 76.55 77.62
HORVU2Hr1G038740.1 Barley golgi, mitochondrion, plasma membrane 90.69 77.13
PGSC0003DMT400053881 Potato plasma membrane 80.0 75.57
CDX74984 Canola cytosol, peroxisome, plasma membrane 80.0 74.84
Solyc09g007760.2.1 Tomato extracellular 77.93 73.86
AT2G37170.2 Thale cress plasma membrane 79.66 70.43
Os07t0448200-00 Rice mitochondrion, nucleus, plastid 65.17 68.23
Os02t0666200-01 Rice plasma membrane 66.55 66.78
Os03t0861300-01 Rice cytosol, peroxisome, plasma membrane 64.14 66.43
Os04t0559700-01 Rice plasma membrane 65.52 65.97
Os09t0541000-01 Rice cytosol, plasma membrane, vacuole 64.83 64.83
Os10t0481100-01 Rice plasma membrane 19.31 60.22
Os06t0336200-01 Rice nucleus 33.1 38.71
Os02t0658100-01 Rice vacuole 25.86 36.41
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 17.59 35.92
Os03t0146100-01 Rice nucleus 30.34 35.2
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 27.93 32.27
Os10t0492600-01 Rice plastid 29.31 32.2
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 28.28 32.03
Os04t0527900-01 Rice plastid 27.59 30.19
Os04t0550800-01 Rice endoplasmic reticulum, plasma membrane 26.9 29.0
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 26.21 24.2
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EntrezGene:4343122EMBL:AF062393EMBL:AK072519EMBL:AK103970
EMBL:AK119656InterPro:Aquaporin-likeInterPro:Aquaporin_transptrUniProt:B7EKW3ProteinID:BAC15868.1ProteinID:BAF21459.1
ProteinID:BAT01306.1ProteinID:EAZ39662.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833GO:GO:0008150GO:GO:0015250
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0034220GO:GO:0055085InterPro:IPR023271
EMBL:KJ909972InterPro:MIPInterPro:MIP_CSEnsemblPlantsGene:Os07g0448800EnsemblPlants:Os07t0448800-01PFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF260UniProt:Q8H5N9SUPFAM:SSF81338
TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI00000AD566RefSeq:XP_015646828.1SEG:seg:
Description
PLASMA MEMBRANE INTRINSIC PROTEIN 2AAquaporin. (Os07t0448800-01);Non-protein coding transcript. (Os07t0448800-02)
Coordinates
chr7:+:15406442..15409748
Molecular Weight (calculated)
30286.8 Da
IEP (calculated)
8.575
GRAVY (calculated)
0.607
Length
290 amino acids
Sequence
(BLAST)
001: MGKDEVMESG GAAGEFAAKD YTDPPPAPLI DAAELGSWSL YRAVIAEFIA TLLFLYITVA TVIGYKHQTD ASASGADAAC GGVGVLGIAW AFGGMIFILV
101: YCTAGISGGH INPAVTFGLF LARKVSLVRA ILYIVAQCLG AICGVGLVKA FQSAYFNRYG GGANTLAAGY SKGTGLAAEI IGTFVLVYTV FSATDPKRNA
201: RDSHVPVLAP LPIGFAVFMV HLATIPITGT GINPARSIGA AVIFNNEKAW HNHWIFWVGP FVGAAIAAFY HQYILRAGAI KALGSFRSNA
Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)
001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.